MmuINT0008014 @ mm9
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79471408-79471842:+
Coord C1 exon
chr10:79471408-79471585
Coord A exon
chr10:79471586-79471672
Coord C2 exon
chr10:79471673-79471842
Length
87 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGGA
5' ss Score
6.03
3' ss Seq
AAGGCCCTTGCTCTGCCCAGATC
3' ss Score
4.63
Exon sequences
Seq C1 exon
ATATGGGGGCTTCTCCCTGGGAGGCCGAGATCCAGACCTGCCCACAGGGCATGAGGTGGTCCGCACATTGGCAGAGATTCGGGCACTGCTGAGCCCCCAACCTGGGAATGCGCTAGACCGTATCCTGAACAACCTCACTCAGTGGGCCCTTGGCCTTGATGCTCGGAACAGCCTCAAG
Seq A exon
GTGGGAGCTGGGGCTGGCAGGCAGAGGTGGTCAAGGAGATCCAAGGTCATGTGCATATCTGGACCTTAAGGCCCTTGCTCTGCCCAG
Seq C2 exon
ATCTGGTTCAACAACAAGGGCTGGCATGCCATGGTGGCCTTTGTGAACCGAGCCAACAATGGACTCCTACATGCCCTCCTACCATCTGGTCCAGTCCGCCATGCCCACAGCATCACTACACTCAACCATCCTTTGAACTTGACCAAGGAGCAGCTATCTGAAGCTACACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-Abca7:NM_013850:31
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.100 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(17.5=98.3)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(16.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACAACCTCACTCAGTGGGC
R:
GAGTGTAGTGATGCTGTGGGC
Band lengths:
175-262
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: