BtaINT0011199 @ bosTau6
Intron Retention
Gene
ENSBTAG00000020766 | ABCA7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:HGNC Symbol;Acc:HGNC:37]
Coordinates
chr7:45175605-45176038:+
Coord C1 exon
chr7:45175605-45175782
Coord A exon
chr7:45175783-45175868
Coord C2 exon
chr7:45175869-45176038
Length
86 bp
Sequences
Splice sites
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
3' ss Seq
TGGCCCCAATTCCATCACAGATC
3' ss Score
6.72
Exon sequences
Seq C1 exon
GTATGGGGGCTTCTCCCTGGAGGGCCGAGACCCAGGCCTGCCCTCGGGCTTGGAGGTGGGCCGCTCCCTGGAGGAACTGCGGGCACTGCTGAACCCCGCACCAGGCGAGGCCCTCGACCACCTCCTGAACAATCTCACAGCATGGGCTGTTGGTCTGGACACTCAAGATGGCCTCAAG
Seq A exon
GTGGTAACTGGCGGTGGCCAGCTGGCACTGTGGTGGGGGAGGTCTGATCCCAGGTCACTGACCCCTTGGCCCCAATTCCATCACAG
Seq C2 exon
ATCTGGTTTAACAACAAGGGCTGGCACGCCATGGTGGCCTTTGTAAACCGAGCCAACAACGCTCTCCTGCGTGCCCACCTGCCACCAGGCTCCTCCCACCATGCCCACAGCATCACCACGCTCAATCACCCCCTGAACCTCACCAAGGAGCAGTTGTCTGAGGCTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020766:ENSBTAT00000020083:31
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.083 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=PU(12.3=65.0)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(17.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTGGACACTCAAGATGGCCT
R:
TGAGGTTCAGGGGGTGATTGA
Band lengths:
167-253
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]