GgaINT0144865 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2380292-2380615:-
Coord C1 exon
chr28:2380589-2380615
Coord A exon
chr28:2380462-2380588
Coord C2 exon
chr28:2380292-2380461
Length
127 bp
Sequences
Splice sites
5' ss Seq
AAGGTGAGC
5' ss Score
9.6
3' ss Seq
TGAGCACCCTTGGGCTGCAGGTG
3' ss Score
4.89
Exon sequences
Seq C1 exon
GGCCTGGATGCACGCAGGAACATCAAG
Seq A exon
GTGAGCTCAGAGCTGGAGGCATGGGGACACGTGGCACTGGCTGTGTCCCCTCTCTGGTGTGGGGAGCAGTGCCACGGGCTGGCAGAGGGAAGGGGAGCAGAGCCCAGTGAGCACCCTTGGGCTGCAG
Seq C2 exon
GTGTGGTTCAACAACAAGGGCTGGCACGCCATGGTCGCCTTCCTCAACGTGGCCAGCAATGGGCTGCTGAGGGCACAGCTGCCTGCAGGCTCTGACCCCGCACTCTATGGCATCACGGCCATCAACCACCCCCTGAACCTCACCAAGGAGCAGCTCTCGGAGGCTGCACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(2.4=100)
A:
NA
C2:
PF126982=ABC2_membrane_3=FE(17.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGATGCACGCAGGAACATC
R:
AGTGCAGCCTCCGAGAGC
Band lengths:
194-321
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]