MmuINT0008028 @ mm9
Intron Retention
Gene
ENSMUSG00000035722 | Abca7
Description
ATP-binding cassette, sub-family A (ABC1), member 7 [Source:MGI Symbol;Acc:MGI:1351646]
Coordinates
chr10:79477213-79477932:+
Coord C1 exon
chr10:79477213-79477305
Coord A exon
chr10:79477306-79477691
Coord C2 exon
chr10:79477692-79477932
Length
386 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTGGTCCTGTCCCCTCCAGGTT
3' ss Score
11.34
Exon sequences
Seq C1 exon
CATGGAGGAGTGCGAAGCGCTCTGCACGCGCCTGGCCATCATGGTGAACGGGCGGTTCCGCTGTCTGGGAAGCTCTCAGCATCTCAAAGGCAG
Seq A exon
GTGAGCAGGGCAGGATGGACTGGCGGGAAGAGAAGAGTGCTGTGGGTGTGGTTAGGGCTAGAAGATAGGGGCGGGCCATATGCACCATAGGGGCAGAGCCCGACTGTATGAGGGAAGCCTGGAAAGGTGGAAGTGCTCAGAGGAGCTTTTTGGATGGAGTCCAGGGGAGGTGAGGAGTGTCTGTCCTTCGATACAGGTGTGCCAGGTCCTCTGAGTGGGCGTAGTCTCTTAGACTCGTGGGCGTGGCTCGCAGCAGGGTAGGGTGAGAAGGAATTGGGTTGGGTCCAGGTGTCCAAGACAGGCCAAGGACAGGTCTAGTAGGGAGTATCGAGATTTCGAGGAGCAATAGGGGCCATGGCCTGCATCCCTGGTCCTGTCCCCTCCAG
Seq C2 exon
GTTCGGGGCTGGCCACACACTGACTCTAAGGGTCCCACCGGACCAGCCTGAGCCGGCGATAGCCTTCATCAGGATCACATTCCCTGGGGCTGAACTCCGGGAGGTGCACGGCAGCCGTCTGCGCTTCCAACTGCCACCGGGGGGCAGATGCACCCTGACACGAGTGTTCAGGGAGCTGGCTGCCCAGGGCAGGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTCTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000035722-Abca7:NM_013850:44
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.111
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGGCCATCATGGTGAACGG
R:
CAGAGTGGTCTGGCTCACAG
Band lengths:
297-683
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: