GgaINT0144878 @ galGal3
Intron Retention
Gene
ENSGALG00000002453 | ABCA7
Description
NA
Coordinates
chr28:2377371-2377803:-
Coord C1 exon
chr28:2377711-2377803
Coord A exon
chr28:2377615-2377710
Coord C2 exon
chr28:2377371-2377614
Length
96 bp
Sequences
Splice sites
5' ss Seq
CCGGTAATG
5' ss Score
6.21
3' ss Seq
CCGTCCCTTCCTTGGTGCAGGTT
3' ss Score
8.67
Exon sequences
Seq C1 exon
CATGGAGGAGTGCGAGGCGCTGTGCACCAGGATGGCCATCATGGTCAATGGCCGCTTCCGCTGCCTGGGCAGCGTGCAGCACCTCAAGAACCG
Seq A exon
GTAATGGGTGGGGGCGGCCCCACTGGTGGTGGTGGGGGGGGGGGGGCTGCGCTGGAAATAAGCGTTGCCTGCATTGCCGTCCCTTCCTTGGTGCAG
Seq C2 exon
GTTTGGGGATGGGTACACAGTGGTGGTGCGGGCGGTGGGGTCCGGCCCCGCGCTGGGCGCTGTGCAGCATCTGATGCAGTGCAGCTTCCCCGGCATCGCGCTGCAGGAGCAGCACGGCAGCACGCTGCAGTACCGCCTGCCTTCCCACGCCTGCTCCCTGGCACACGTGTTCGGCGTGCTGGCAGCGCACTGCGGGCGCGGCCCCATCCAGGACTACTCTGTGTCCCAGACCACCCTCGACCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000002453:ENSGALT00000003869:26
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAGGAGTGCGAGGC
R:
GGAAGCTGCACTGCATCAGAT
Band lengths:
182-278
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]