RnoINT0010389 @ rn6
Intron Retention
Gene
ENSRNOG00000012939 | Abca7
Description
ATP binding cassette subfamily A member 7 [Source:RGD Symbol;Acc:1303134]
Coordinates
chr7:12742786-12743496:-
Coord C1 exon
chr7:12743404-12743496
Coord A exon
chr7:12743027-12743403
Coord C2 exon
chr7:12742786-12743026
Length
377 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTGGTCCTGTCCCCTCCAGATT
3' ss Score
10.54
Exon sequences
Seq C1 exon
CATGGAAGAGTGTGAAGCGCTCTGCACGCGCCTGGCCATCATGGTGAACGGGCGGTTCCGCTGTCTGGGAAGCGCTCAGCATCTCAAAAGCAG
Seq A exon
GTGAGCTGGGCAGGATGGACTGACATGAAGCGCGCTGTGGGCGTGGTTAGGGCTAGAGGCTAGGGGCAGGGCCGTTTGATGCCTCTTAGGGGCGGAGCCAGCTTGGGAAGGTGGAAGTGTTCCGAGGAGCTTTTTGGATGGAGTCTGGAGGAGGTGAGGAGTGTCGGTCCTTGGGCACAGGTGTGCCAGGTCTTCTGAGTGGGCGTGGTCTCTCAGACTCGTGGTCGAGGCTCTCAAGCAGGGCCGTGTGAGAAGGAATTGGCTTGGGTCTAGGAGTACAAGATAGGTTAGGGACAGGTCTGGTGGATATAGGGAGCAGCGAGGTTTCTAGAAGCAATGGGGGCCATGGCCTGCATCCCTGGTCCTGTCCCCTCCAG
Seq C2 exon
ATTCGGGGCTGGCCACACACTGACTCTCAGGGTCCCACCGGACCAGCCGGAACCGGCGATAGCCTTCATTGTGACCACATTCCCTGATGCTGAGCTTCGGGAGGTGCATGGCAGCCGTCTGCGCTTTCAGCTGCCGCCTGGGGGCGGATGCAAGCTGGCACGAGTGTTCAGGGAGCTGGCTGCGCAAGGCAAGGCCCACGGTGTGGAGGACTTCTCTGTGAGCCAGACCACTTTGGAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000012939:ENSRNOT00000064886:45
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.074
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGGAAGAGTGTGAAGCGCT
R:
CTCCTCCAAAGTGGTCTGGCT
Band lengths:
334-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]