MmuINT0010604 @ mm9
Intron Retention
Gene
ENSMUSG00000026834 | Acvr1c
Description
activin A receptor, type IC [Source:MGI Symbol;Acc:MGI:2661081]
Coordinates
chr2:58140092-58148576:-
Coord C1 exon
chr2:58148337-58148576
Coord A exon
chr2:58140323-58148336
Coord C2 exon
chr2:58140092-58140322
Length
8014 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
GCTGCCCTTTCTTTGACTAGGTC
3' ss Score
9.33
Exon sequences
Seq C1 exon
CATCGCCAAATGCCCCTCGACTTGGTCCCACAGAGCTGACGGTTGTTATCACCGTGCCGGTTTGCCTCCTGTCCATAGCCGCCATGCTAACAATATGGGCGTGCCAGGACCGCCAGTGCACATACAGGAAGACTAAGAGACACAACGTGGAGGAAGCGCTGGCTGAGTACAGCCTTGTGAATGCAGGAAAAACACTCAAGGATCTGATCTACGATGCTACTGCCTCTGGCTCAGGCTCTG
Seq A exon
GTACGTGCATATTTGCAGCAAGCCGACTCTTGTTTAAAAATAAATGAACAATGGTTTTGATCAAAGTGTCCCATGTGAACTCATCAACTAAAGTGCTCACTGCGGGACAGAATAAATGAAGTCGTGGATAGAAATCGCCCGAAGGATTACAGTAGTAGGGTTCTGTATAGTTTTTCAAAAGGCCTTTATTTTCTTCTTTATCACTTTACTACATCCTATTTTACTTTCTGCTTTTCTTGTGTCTGTGTGTGTGAGGAAGTGGGGGAGGGAGAGAGAGAGAAACACACACACCACACACGTACACACATTGCAAGCATAGAGAGATAGCGATGGGGGGAGGAGAGAAGGGGAAGGACATGGAGTTGAGTGGGGAGAAGGTGGGGGAGGGGAAAACATGATCAAAATATATTGTAAGAAAAAAAAATCCCACTTTAAAAAAGGAGAGTGTTAGATGAAGAAGAAAACTATCCTGATGTCTTCTTAGATGTCCACTGCAGCTTCTTTGGGTTTAGGGTTTGCTGTTGTTGTTGTTGTTTTGTTTTGTTTTTTAATTCCCGGAATATTTATTTTTTTAATGCAGATTCCATATGGCCTTTTCTACATATATTCAAACTCAGAGTTAAACAAGTGAATAACCAATTCTTATAAAAATGAAAGGACATATCATTGTGAAAGTCATTGAGCCTATCATTGTATTATCTCTTTGTTTTAATTTATGACATATTTTTATGTCATCAATATCCTGCTGTAGAATTCTCAGTAGATTCCTGCTGCTGTCTCAAAACTCTTGGGACATATTAATTGTTTTTTGTTTGTTTGTTTGTTTTGTTTTTATACCGTGGGGTTTAGTTCCTTGTTTATTTGTTGTAGCTTTCCTTTTTCCCCCCACCTCTTCCCCCTTTTGCCAGAGCCATCACTGCCACACTCTTGGACTGTTTAATGAAATCAGGGCAGTTGGGGTGTTCGGTTTAAGTCCTTTAAGTGTGGGGAAATTAGTTAATAAATCAGTTTTTCTGTGGACATTTGTTTGTGACCCTAGGAGGGCTTGTAGACCTGTAGGTGTCCCATGGGGATATGCTTTCTGAAGCTAGCAGGAGCTGCCCTGGAATTAAATCAACATTAAGTTCTAGAAGCCCATAAATAGGAGCCTGACAGAAGCTTGTGGCATCCCTAGCTGGTTCTGAAGCTCAAGGCTATTCATCCACCATTATGTTTTCTTCTTTAATGGATTCAGACCTCTGATGAAGAAATTCTGATATCCAGACTGCATCATGGAGTAAAAGAGTCTTTCTTAATACGACAAAACACCAGGGAGTATAGGAACAGAGCAGGATTTCCCTGAAGTTATAGGGATTCCTCTCTTCCCATCTGAATTTCTTGAAATCCCTAGCCCTGGCTTTGCAGAAATATGACCAAGAGTATACCCAGAAGAGCCACTTAATATGCCCTTACAACTCTCTTTGCATTAGAAAGATCATTTGTGTCTCAATTCCAGCCAGGGACAGTGGTACCTGTCTGTAATATAAGTACTTGGGAGGCTGTAGCAAGAAGCTCCTGAGTTAGGGACCAGCCTGAGCTCCATGACAAATCCTTGCTTTGAAAAAAATGAAAGGAAACCAAAGCAAAGAGAACCAAACACACAGCTTTGAGGACCTCTCTCACTGGTGGGTGTGGGCAGAAGCCAGGCAGACAGTCTTAGAGAGGCAGGAGGGAAACCACACCACATCATTCAGGCACACATATTTAACAGGAAGTGCTCTGGATGCATCAGAAAGGAACACCATTGTACTGACCTGAAGAGTCTAATGGGCCAAACCATCAGTATATCATCAAGTGGGATGTTTTTGAGAGAAAACTGAGAGAAGACCAAGTCCTGCAATTACAAAGCATATGAAGTTGGAATCCAAATTATGTCATCGTATAGAAGGCTTACCTTTTTATCTTAAAAGCAATATTCCTCAATACTCAAACTCTGCTTCTTTAGAATTGAGATCTACTCTACCCCAAGGTTTTGACTACTGGCAACATTCAGGCATGAAGAAGTCTTATTTATGCTTAATTGCTAGAAATATATCTTCTTTTCTTTTTCTGTTTTTTTTTTTACTCCTTTGAGACTCTGTTTCTCTGTGTAGCCCTAGTTTTCCAGGAACTAATTCAATAGATAAGGGTGGTCTTGAGCTCAGAGATCTTCCTGTCTCCTGAGTTCTGGGATTAAAAGAAAGTGCCACCACTACCAGGCAAACACATTTCTTTATAACATTCAAAGGAAACACATTTCTTTATAACATTCAAAGGACTGAACAATGTTCTGCTTAATTTCCACAAAACCAACTTAGGTCCTTTGACGATGTTAGGTGGTGCCCTGGTTAGTTTTTTATTGTCAACTTGACACAGCCTAGGGCTATCTGAAAGGAGAAGCCTCAGTTGAAAAGTCGCCCGGGTCAGTTTGGTCTGTGGGCCTTTCTATGATGAAATTGTCTTGATTGCTGATTGATGTAGGAAGGCCCAGCCCACTAAAAGTACTACCATCCCTGGGCAGATGTTCTTGGACCATATAAGAAAGATAAATAAGAATAGGCCAGGGAGTCATCCAGCAAGCAATGTTTCTCCACAGTTCCTGCCTCCAGGTTTCTACCCTGACTTCCTTCAAAACAGGCTGTAATCTGGAAGTATAAGCCAAATAAATGTTCCCTCTCTAACCTGCGAGTTGCTTTTGGTCACGGTGTGAGTTTATTTTTCTACTTTCTAAGTATATTGAATCTGACCCCAAGGATTTCTTCTCCAAGTTAAGTGATACAAGTTAAGAAGCAGACGAGTAGATGTGTCATTTAAGAAAGGAGTAATGACTTCCATTGTTGGTGGGATTGCAAGCTTGTACAACTACTCTGGAAATCAGTTTGGTGGTTCCTCAGAAAATTAGACATAGTTCTACCGGAGGATCCCGCAATACCTCTCCTGGGCATATATCCAGAAGATGTTCCAACCGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTATAATTGCCAGAGGCTGGAAAGAACCCAGATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATTTACATAATGGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGGTAAATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACCCAATCACAAAAGAAATCACATGATATGTACTCACTGATAAGTAGATATTAGCCCAGAAACTTAGAATACCCAAGATATAAGATATAATTTGCAAAACACATGAAACTCAAGAGGAATGAAGACCAAAGTGTGGACACTTTGCCTCTTCTTAGAATTGGGAACAAAACACCCATGGAAGGAGTTACAGAGACAAAGTTTGGAGCTGAGACGAAAGGATGGACCATCTAGAGACTGCCATACCCGGGGATCCATCCCATAATCAGCCTCCAAATGCTGACACCATTGCATACGCCAGCAAGATTTTGCTGAAAGGACCCTGATATAGCTGTCTCTTGTGAGATTATGTCGGGGCCTGGCAAATACAGAAGTGGATGCTCACAGTCAGCTATTGGATGGAACACAGGGCCCCCAAAGGAGGAGCTAGGGAAAGTACCCAAGAGCTAAAGGGGTCTGTAACCCTATAGGTGGAATAACAGTATGAACTAACCAGTACCCCTGGAGCTCATGTCTCTAGCTGCATATGTATCAGAAGATGGCCTAGTCCGTCATCATTGGAAAGAGAGGCCCCTTGGTCTTGCAAACTTTATATGCCTCAGTATGGGGGAATGCCAGAACCAAGAAGTAGGAGTGGGTGGGTAAGGGAGTGTGTGGGGGAGGGTCTGGGGGACTTTTGGGATAACATTTGAAATGTAAATGAAGAAAATACCAAATAAATAAATAAATAAATAAATAAATAAAAGAAGTAATGAGCTGTCAAGAAATGTAAATGAAGAAAACACCAAATAAATAAATAAATAAATAAATAAATAAAAGAAGTAATGAGCTGTCAAGATGGCTCACTGACTATTATTGGTGCTTGGTGCCAAGCCTGAAGACTCAAGTTTATTTCCAAGGAGTCACATGGTAGGAGAGAGCCGATTCTCATTGGTTGTTCTTTGAACATACATTCCTTATAGTACCCCTCCACACAAATTACAATAAATTTTTTTATAGGAAATAGTTATGAACTGAGCACAAAATACAAAATTTCTACAAGTGGCACAGACCCAGATTAGTGTAGATTAGTGTAGATTAGTGTAGGAAGGTTTTTTTTTTTTTTCTTCAGCTAATGGAGACCATTTCAGAGAGCCACACTGTTCAAATTTCACAGAACAACTGATCATGAGGTACCTAGTACCAGAGCGTACACCCTCAACACAACTCCTACAGCTAAGGCTCAGGAAACATCCCAGAATATGGAGTGGAAAGATTGTAAGAGCCAGAGAAGCAGCAAGTCTTCTGTGAGATTGTGCCTCCTGGAATCGGCAGAGAAATTTCACCTGTGAGACCTCAATTACTTGGCTGCCCGGACAAGGCCACAACACAGACAGCACCAATAAACATGTTAATGTGGAAGGGCAAAATCTCATGAAGCCACCAAATCTCATGGGGACCCCAAGTTCAGACATACCAAATGCAGTCATCAGGTTGTATTTATATATTTGTATGTATTATACACGTAACAATAAAAATTTTTAAAAATCATGTTGTTGAAAGTTTTTTAAAAGCATGTTTCAGGCATGGATATGAATTTATTGGCTTCTGAACTGTTCCCTTTGAGAACATTCTAAGACATTTTATGAAAGGAAGAAGAAAACATGCCCAAACCTGGATCATTTCTTTTTGTTTTTCTGTAGTGAATATTGAACCCAGTGCCTCACACATCACATCCTGGGCAAGTGTTCTTGGGCAAGTGTTCTTACTCTGGGCTGCATCCCCAGGGTTGCTCGCTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCACTCATGCACGCATGCACACACATACACACACACACACACACACACACACACACACAGAGAGAGAGACACTCATTCTATCATTTATGTATCTATGTATCTATGTATCTATGTATCTATGTATTATGTATGTATGTATGTATGTATGTATGTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCATTTATCTGTCTATCTACCATCTGTCTATCTATCATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATTTATCTATCTACCTTTCTATCTATCTACCTTGTGTGTGTGTGGCACAGGGTGGGGATAAGGTGTCCCTAACTTCAATCTGTAGATTGGTATCACCAGGCTCCGCTTATGGATAAATTTCCTTAAAGACAAATTTGAACAAGCTTTAGGCATATTGTATAGCCACAGCTGTTTGGCAGTGACCCCTAGCTAAAAGCCCATGCCTTTGAGCATCATAGAACAGGTTTACCATCAGCAATGCTTCTGCCACAATAGCTTGCCTGTAGGGAGGAGACTGGACCAACCTGCTTCTTCTCTGCCTTTCTCAATTGGTTGGTGACCTTGGATCTGAGGCAGCTTTGTCGAATATTGAAAAACCCTGATTACGAAGCTTATCCATGACCAGGTCAGGGACAAATTTCAAAGAGACGGAGAGCTTACAAAGTGAAAACAAACGATGTTTTATTGGACTCTGCTTGAGAGTGAGCTTTGTCTCTGGCGGCTTTTTAAGGAAGTGGGGAGCCTGCTTCTTTGTTTTACTGTATAGCATTCTGACAGACGGTGACACAAGCCAGACATCAGCTTTCTATAATCCCTGGTGAAAAGATTCAAATGAACTCATAGCAAGAGACAAAGTTTCTGTTCAAATGCAGCCTGGAGGTGTATAGCATTCATTTTGTGATTTGCTTTGTGAAGCAGCTCTCGTTCTCCTGCCTCACCCTGCTCACCCCACTGACCCCCTTACACGTTCTTCTTTGTCCATCAATTGGCTGTTGCATCAACCACAGCATGAAAACTTCACTGGTTCCTTTCTTTCTTTGTCAATGATGATGCAGAGAGGGGTTAATTGTTAGTATCACGTTGTGCCAAACACATTGAGTGAAGCCTACAAAGATAACCCTGGCTATTTATTGTTGCACGTCTTCCTTTCCATAGAGAGGAGTGCAGGTCTGTCTCCTCTGGGGGACAAAGCATTCTGGGACAGCCTCTGGCAGCAGCAGACTCCCTTTAGGTCTGATTACTGTCAGGTTCCAATTTTCTCATCGATAGATGATGAGGCTGAACCAGATGGTCCCCAAAGAACTTTTGGACTGTGGGGCTTGGTGACTAATTGTTGAGGCTCATACCAGTGAATTTATAGTCTGTGCCTCTTCACCGTCGTGGGTGGTTCTACTGGAGATGAGAACATCTGTGTAAACACTGGCTCATTCTTGGAGCAGGGGACAATGCCCGGAGGAGCCACACGGGCATTGTTTTGTCCAGCCACCTGAGGACAATGACAATTACCAAGCTGATTTTCTACAATACGCTTATGCTGTAGCCTATCTGCAATACAATTATAGGAATGATAAAACCTCGTGGACCTTATATTGAAAATGAAGCAAGTGAGAAGAAAGAATATTATAACTCACTCCGATTCTGTCATGTGCTTCAGTTTCTTTTCTATCCATAGTCTGAAAAGCTACAAACTCATAGAGTTAAAGTTTCCTACCCTGTTTCCAATTAAGAGTGTAGCAAAGCAGCCTCCGGTGTCATTGGAATACCTTTACTAACAGCACTATCAGTGTTCATCTTACATGATCCATTCTAAGCCTGCTGTAATATTAAGAGTGTAGCCGTTATTTATCATGCATTATGCCAGCTACAGTGCTAGCTGCTCAGTCTCCATCTTAACTTTTATATTGTCTCATTTCCTGGAGAACAGGGCTAAAGCTCACAGAAGATGAGAATCCTGCTTGTAGTGACTAGATGATGTATCTATGCTAGCACATCCTCACCATATTTCACATTTCAAAGACCTCCTTTTTCTTTAGTATAAATAGCAACGTATTCTATAATTTTGCATAAATTCTCTACATTTTGCATTAATTCTATAAAATAGAATTTTAGAAGTAGAGTTATTGTTTTAAAAATACAATCGGTTTGGACATGGTGCAATGTACTGTTAGTCCTAGCACTTGAGAGTCAGAGGCAGGCAGGTCTCTGGGAGCTTGAAGCCAGCTTGCTCTGCACTGTGACTTCCAGATCACCCAGGGATACATATTAAGACCCGTCTTAAAACAACCACAACAAAAATTGATGAGCGTTATACATATACCAAGAATGTGTTTTCTTGGCATTTATTTCTCAGAAACATATTCTCCGTGTAGCGTTCCTATCTTACTGTGTCATTGAATTTGATTACTTACATGAACATTTTAATTTTGTTTTGAAAAAATATCATGAAGAAGGTTTTCCCTTTGCAGTAGTACCAGAGCCATGCATTTCACGTGTTAGCCATGCATGGTTTCCTTTGAGTCAGACTGGCTTTGTGAGAAAATTAGCAGGATTTGCCACAATTCTTAGAAATCAGATATCTGCGGCATGCTGTGTTTAAAAAGTTTTGTTTGTGAATAAGAGAAGAGAAATTAATAATTTAGGACTTTTTTTTTCCTGAGACAGGATTTCTCTGTATAGCCTTGACTGTTCTGGAACTCACTCTAGACCAGGCTGGCCTTGAACTCAGAATTCTGCCTGCCTCTGCCTCCCAAGTACTGGGATTAAAGGCATGCACCGCCACTGCCTGGCTTAATTTAGGATATTTTATAGGTCATGCCTTAGCATTACAGTTGGTTGTAATGATGCTTATTTCTTCAAATTTAACATGCTAAAGTGCCTAAGTGTTTGCTTTCTATGTCACAGCGACCGTCACTGGCATTGTGACTTTTGTTTGAATGATCAGGCTGCCCTTTCTTTGACTAG
Seq C2 exon
GTCTGCCTCTCTTGGTTCAAAGAACAATCGCAAGGACAATTGTACTTCAAGAAATCGTAGGAAAAGGTCGGTTTGGGGAAGTGTGGCACGGAAGATGGTGTGGAGAAGATGTGGCTGTGAAAATATTCTCCTCCAGGGATGAGAGATCTTGGTTCCGTGAGGCGGAAATTTATCAGACGGTGATGCTGAGACACGAGAACATCCTCGGTTTCATCGCAGCTGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026834-Acvr1c:NM_001111030:3
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.028 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=21.0)
A:
NA
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: