BtaINT0013480 @ bosTau6
Intron Retention
Gene
ENSBTAG00000019337 | ACVR1C
Description
Bos taurus activin A receptor, type IC (ACVR1C), mRNA. [Source:RefSeq mRNA;Acc:NM_001192879]
Coordinates
chr2:38573705-38579994:+
Coord C1 exon
chr2:38573705-38573944
Coord A exon
chr2:38573945-38579763
Coord C2 exon
chr2:38579764-38579994
Length
5819 bp
Sequences
Splice sites
5' ss Seq
CTGGTATGT
5' ss Score
8.14
3' ss Seq
TTCATGTTTTCTTTGGTTAGGTC
3' ss Score
8.08
Exon sequences
Seq C1 exon
CATCACCAAACGCCCCAAAGCTTGGACCCATGGAGCTGACCATTGTTGTCACCGTGCCAGTTTTCCTCCTGTCCATAGCTTCAGTGCTGACAGTATGGGCATGCCAAGGTCGACAGTGCACCTACAGAAAGAAAAAGAGACCGAATGTGGAGGAGCCCCTCTCTGAATGCAATCTGGTAAATGCTGGGAAAACTCTGAAAGATCTGATTTACGATGTGACTGCCTCTGGATCTGGCTCTG
Seq A exon
GTATGTGCCTGTTGCTCATTTTTTCAGTAAGAAAAATTCTTATTTAAAAATAAATCCCATTTTTTTTCTTAAAATTTTTTATTCTGGTAAAAGTCACATAATATACAACACACTATTTTAACTGTATTTAAGTGTAGAGTTCAGTGGCGCTAATGACATTCACATTGTTGTACAACTCTCGCCATCTTCCCATCTTCTGAAATGTTCACCTTCCTAAGCTGAAGCTGTGACCCCACTAAACACTAACTCTCCATCCCCTCCCCCATCTCTCCCCCCATCCCCCAGCCCCTGGCATCTACCTATGTACTTTCTGGCTCTATGACTTTGAGTCTTCTAGGTACCTCGCTTTTTAACAAAAAAGGGGCCCAAATATTATTAATTCCATTGTTTAAAATACTTGATATGGTACACGGTAAATTCTGGCAAAGAAACTTCTTTCAGCATTTGATGAAGAGTAAAAACTGTCCTGGCCTAAAGAATTAAATCTTCTCAATTGCTTTTTGTGCCTTTAGGTATTCAGATTCTTATTTTCACGTGCCTTCAGAATTTATTTCTGAAGCCAGGAGTTTCTTTTCTCAGACCTCTGCCACATTCTGGTTAGTAATAATAGTTGTTGCTGTCTTGGTCATGTTTCAGGGGCACAAAAGAGTTATAGGGCTTAAGCATTGAATTCTGGGGAAAAGATATTAGTTATGCAAAGTAGTGTTCTTTGCTTGTGATTATGAAGGTCTTTGGAATCTGTAGTCAACCCCTGGGATGTGTGTGTGTGAAGTTAATAGGGAGCTGACCTGAAATTCAAATTAAGAATATGTTCTTAAAGCTTAGAAACAAAAGGGAAGAGTACAACATTCCTGTGTTGGCTGCTGCTGCTGCTGCTGAGGTTATATGATAACTCTTTCCCTCTTTAATGGAACTTCAGAACCCCTGATGAAGCTGTTCAAAATACCAGGCTGTGTTTTGGCTTAAATGAGCCTTTCTCATAGCACAAAGCATCTGAGGGCTTTCTGGGTTTCGGGTGACAGAGCAGCTTCTCCCTAGTAATCACAAACGCCCTAAGATGGCAGAGGACTCCCAGCTATCATGTATATTTCAGCACATGGTGCTGCAGAAACATGAACTAGGGTGAGCCTCAGTGAACCATTTCGGTCATTCCTGCTTTGGAAAGATCATTAAGGATGATTACCCCCAAACAGATTTTGAAAACTTCCCTTGCCCATGGCCTTTAGGAGCATCCAAGCAGGCACAATTAACAAGGGCAGATGACAGAGGAGTGGGTAGCCTCTGTATGGGCATCCATATTTAACACAAAGCCGCTTTGGACTCAGAAGTATTTATCAGAAAAGAGACCTAATTACATCATCCAGAAAGCCCAATTAGGTTCCTGGCTCTGGGGGCATGATCACTTGCTGACTGACCAAAGCCTCAGTGTTTACAACACTGCACAAATCAGGAGACATGTTTTCAAAGGAGAAATATTGAAAAGAATATCTCCAAACTGTGAAGCTTGTAAAAGACATCCAAATTACGTTGTTGTATAGAAAGATGGCACTTTTTCTTTAAAAGTAAAACCTGTTAGGATTTAATACTCTTTCTTCCTTAAGTGTTACATTCTGGGGGCCACTGGGCCTTAATTTCTTGAGCCCTGGCGATATTCTAGGCTCAGAATATTGGCCCAGAAAGCTCTGATTTGTGCCAACTTCCTTGAAATCTTGTATAATTTCTGAAATGTTTAAGTGATTAAATAGCCATCTATTTCATCCCCACCAAAACATTTTAGTTCATATGAAGATGTAAAGCAGAAATACATGTTTTGGAGCTACTCCTATTTTTAAAAAGAATTTGTTTATTTTCCTATATATGGCTGTAGTGGGTCTTTGTTGCTGTGAGGGCTTTTCTGTAGTTGTGGTGTGGGCTTCTCATTGCTGTAGCTGCTCTTGTGGCAGAGTGCAGTCTCTAGGGTGCACATGTAGTTACAGCAGGTAGGCTCAGTAGTTGTAGGTTCTGGGCTCTAGAGCATAGGCTCAATAGTTAGTTTCTCATATACTTAGTTTCTCTTCGGCAAGTGGGATCTTCCTGGACTAGGAATTGAACCTGTGTCTCCTGCATTGGCAGGCAGATCCTTTGCCATTGAGCCAACAGGGTAGCCCTGGAACTACTTCTTGAATATGTTTAAGATGATCAGGGATTTCCCTTTCTAATAAAAGAAATGGAGATTTTATAACTGGAAGCTGAGTATTTAGTTTAAGAAAGTATTCATGAGCCAGGGCATAAAATCAGAAATTAAGTTTTTTGGTATTTTTGTTCATCTTGAAACCTAAATCTAGACTTAACTAATTGCTGGACCCTCTCTTTAGATTTTTCTACATTCTTTCTTAAAAGAAAGCTGTAAATGTACCCAGACATGGATGATTTTTTAAATGATCAACTTAAAAGCGTTCTAGGCATTTTTCTCCAAAGCCAGTGGCATATGTTTGGCAGTAACCACTGAATGACAGGAGTGGATGGCTACACTGCCTTGGATCACCAGGGAGAGTATGTCCATGTGTAGCAAGGCTTCTGTCACAAAAGCTCACCGATCGGAAGGAAATCAGGCATTTTCCTTCCCCTCTGCTTCTCTTCCCTGGCCAGTGACTTTAAACAAGAAGCAACTTTGTCAGGTGTTGAGAGACAAAAATTGTGAAGCATATCCCAACCTGGTCAGGGACAAATTTCAAAGCAATACAATGCCTGCAAGAGAGGAGAACTGACTGATGTTTGACTGCACTGTCTTTGAGAGATGATGGTGTCTCAGGTGGCTTCAAAGAGGCTGGGTAGGTTGCTGGTTTCTGCTGTGATATTACACTCCTGATAAATGATGATGTTTCTATCAGACAGGCCTCAGTTTCTACGTGCTGCATGCTAAGTCGCTTCACTTATGTCTGACTCTTTGGAGCCCATGGACTGTAGCCCATTAGGCTCCTCTGTCCGTGGGATTCTCTAGGCGTGAATACTGGAGTGGGTTGCCATGCCCTCCTCCAGGGGATCTTCGATTTGCAGGGAAAACCAAAGTCCTTGTGTCCGAAAAGGAAATCTCTAAGAGTGTAACACTTACTCAGGTTATTTTTGGTGGTTGCTTTCAAAGACCCTGAAGCAACTTTCATTGAATTTTACTCTCTCAACTTAATTGCTGTGCTGATTACCTTAGATGATATCCTACTTCGTCCCTGGTCTGCAGTCTTGATCATGTGCCTAATAAGTTTGCAGCTTGAAAATATTGACTTAGGTAGTTTTCTAGCCAGTTGTCATTGTTGTGTTTTCATAGGTAGTGATTGGTCATGGTTATGCTTTTTTGAATTTGTGCGTGCAAAATGAGGGGAGGGAGGAGAGATATTGGAATTGTAATTTGGTTTAATAACTGTTCGTACAACTTTCATTATGTGTCAGGTAGTAAAACTGACTATAGCTTACAAAAATAGCCTGGAAAGTTTTCTGCTAAAAATGTTTCCAACAGGCAAGGATTGTAGTCATATCCCTTGAAATGGTGAGAGAGCAAGAACTTGGATTGAAAGCCAGTGTTTTAGTTGTAGGTCTGCCTTCCAGTTATTCCTGGGCAAGTTTTTGATTACCTTGCAGGCCCAATTTTCTCAGCTCTAAAATGATAACATTGAACCAGGTGATCTCAGAAGAAATTTCTGGCTGTGGGACTTTGTGACTAATTGTTGAGACCTATAATAGCAGACTTATAGTCTGTGCTTATTTAGTCATAGTGGGTGGTTCTCATGAAGAAAAGAACATTTGAACAAATTGTGGCTCATTTCAGGAGTAGAGGTGAAGCCTACAGGAGCTTACAAGATTGATGCTATCAGGGTTTCCCAGCCATCAGAGTACAATGATCACTAAACATCACTCTTCTGAATAAATTATACTGTGACCTCTTCAGTTATTTTCTCTCTAATTATAAAAGTAATAAATATTTGTGGAATGTTGGGGAAATCAAGAAAACATACAACATTAGAAAGAAGAATCTCATAATTTACTTCACCCAATTCCCACTAAATAGAAATACCCATCATAGCATCTAGCATATATTGTTTTTAGTCTTTTTCCTAGACATATTTTGAATAGCTAGATACACTTATTTAGATGGATAGAATTTGCTGCTTTTTGTTAGCAAAAGTATTTTTTCATTTAACAAAGTATTGTTTTTATTATAGCAAAAGTATTTTCCTCTGTCATTAAGAAATACCTCTATAAACAACATTGTTATTTTTGGCTCTAAGTAATCCTTCCTTGGACTTCACTGGTAGCTCAGTGGTAAAGAATCTGCCTGCTAATGAAGGAGATGCAGGTTTGATCCCTGAGTCAGGAAGATCCCCTGGAGAAGGAAACGGCAACTCACTCCAGTATTCTTGCCTGAGAAATCCCATGGACAGAGAAGCCTGGTGAGCTGTAGTCCGTGGGGTCACAAAAGAGTTGAGTGTGACTTAGTGACTAAACAACAACAACCCCTCCTTAGACTTAATGTTAAGGGCAAACCATTATGGAGCATGTAATATGCCAGGTACCATGCTGGGTGCTTAACGTGCTGATGAATTCTCACAGTGTTCCTTTGAGAGAGGTAATATTATTGCAGTTTTGCAGGCAAGGAAGCTGAAGCTTCAGTTCAGTTCAGTTGCTCAGTTGTGTACGACTCTTTGCGACCCCATGAATCACAGCACACCAGGCCTCCCTGTCCATCACCAACTCCCAGAGTTCACTCAGACTCATGTCCATCGAGTCGGTGATGCCATCCAGCCATCTCATCCTCTGTCATCTCCTTCTCCTCCTGCCCCCAATCCCTCCCAGCATCAGAGTCTTTTCCAATGAGTCAACTCTTCACATGAGGTGACCAAAGTATTGGAGTTTGAGCTTCAGCATCAATCCTTCCAATGAATACCCAGGACTGACCTCCTTTAGGATGGACTGGTTGGATCTCCTTGCAGTCCAAGGGACTCTCAAGAGTCTTCTCCAACACCACAGTTCAAAGCTTAGAGAAGTTCAATAACTTGTTCATGATTACCATTGGTTCAGCTAAAATTGGAATCCATCTTTCTTATCTGTGGTCTTAATCTCTGCACCGTATTTAAAACTTTTTTTATTATCAGACATTTTCTCTTATTTTGCTCTAAGTAATAATATATTAAATATTTTGACAAATTCTTCTGCATTTTATGTTACCTCTTTAGAATTCTAGAAGTATAAAGCTATTGGTTCAAAAGAATCTAAACATTTTAATACACTCAGAATATATTTTCTTTGACTTTCTTTTATTCCACAGAAAATATCAAATGGATATTTGTGGAACCTTGCTTTTAATGTAACATGATTGCTTCACTTCATTATTGAATCTGATTCTTCATTTTCAAATTTTAATTTGTTTTTTTAAATAATTTATAAAGAATTCTTCTGCACTCTCAGTTGTACTAGGAACCATGTATTTTATTTAAGAGGATAACAGCATATAGTTCTTAACCTTTATATATTTAGTAAACTGATTTTAATGTGCAAATCAAAGGAATTTCCAACAATTTTGGAAAGTTAGATATCTGCCATGGCAAGCTATGTTCAGGAAATTTTTGTTTGTGAATATGAATAGAGAAATTCATAGCAAGAACCTATAGTATTTTTTGAGCACACTTTGACATTTAAGTTTGGTATAATGGTGCTTATTTCTTCAAAATCAGTAAAATTATTAAAGCGCTTAAATGTTTGCCTTTTATGTGAAAATAATGATCATCATGACAATTATTTTCTGGCAGTTACTTGTTTTTAATAATCAATTTCATGTTTTCTTTGGTTAG
Seq C2 exon
GTCTGCCTCTGTTGGTTCAAAGAACAATTGCAAGGACGATTGTACTTCAGGAAATAGTAGGAAAAGGTAGATTTGGTGAGGTCTGGCATGGAAGATGGTGTGGGGAAGATGTGGCTGTGAAAATATTCTCCTCCAGAGATGAAAGATCGTGGTTTCGAGAGGCAGAAATTTATCAGACTGTTATGCTGAGACATGAAAACATCCTTGGTTTCATTGCTGCTGATAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000019337:ENSBTAT00000025753:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=21.0)
A:
NA
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]