RnoINT0012775 @ rn6
Intron Retention
Gene
ENSRNOG00000004828 | Acvr1c
Description
activin A receptor type 1C [Source:RGD Symbol;Acc:621789]
Coordinates
chr3:44284962-44291358:-
Coord C1 exon
chr3:44291119-44291358
Coord A exon
chr3:44285193-44291118
Coord C2 exon
chr3:44284962-44285192
Length
5926 bp
Sequences
Splice sites
5' ss Seq
CTGGTACGT
5' ss Score
9.57
3' ss Seq
TCTGCCTTTCCCTTGACTAGGCC
3' ss Score
9.36
Exon sequences
Seq C1 exon
CATCTCCAGATGCCCCTAGACTTGGCCCCACAGAGCTGACGGTTGTTATCACTGTACCTGTTTGCCTCCTGTCCATCGCAGCCATGCTAACGATATGGGCCTGCCAGGACCGCCAGTGCACATACAGGAAGACCAAGAGACACAATGTGGAGGAACCACTGGCAGAGTACAGCCTTGTCAATGCTGGAAAAACCCTCAAAGATCTGATTTATGATGCCACTGCCTCGGGCTCAGGATCTG
Seq A exon
GTACGTGTATGTTTTCTGTAAGCAAACTCTTGTATAAAACTAAACGAACAATGGTTTTGATAAAAGTTTCCAACGTGAACTCATCAATTTAAGTGCTCAATGAGGGGACAGAGTAAATGATGCCATGAATAGAAATTGCTTGAAGGATGACATGGGGATAGTCTAGAGTAGTAGGCTTCTGTATAGCTTTTCAAAAGACCTTTAGGTTAGTTGTCTCTCCATGAAATCCCCCGTCATCTTGCTTTTTCCCAAATTTAATTTTATTTTAGTTTCTTTTTTAGCCTGTTTACTACATTACACCTTGCCTTACTCTTTTGGGGGGTGGGGGAGGGGGGGAGAGAGAGGCATACACACACCATACATGCACACACATCACAGGCATAGAAAGATAGAGATGTGGGGGAGTGGAGGGGAAGGACATAGAGTTGACTGGGGAGGAGGTGGGGGAGGGGAAACATGGTCAAAATATACTACGTGAAAAAAATTTAAAATCCCATTTTAAAAAGAAGGGGGGGGAGATGTTGGGTAAGGAAAACTGTCCTGATATCTTTTACAAATATCTCACCTTTTTAAAAACAGGACAAAAACATTTGGGAGTGTAAGAACAGAGCAGGATTTCTCTGAAGTAATAGGGGTTCCTCTCTTCCCATTTGAATTTCTAGAAATTCTTAGCCCTTGGTTTTGTAGAAATATGACCAGAATACACCCAGCCTAGCCACTCCATAAGCCCTTGTACAACTCTCCTTGCTGTAGAACAATCATTATTGTCTTTATCCCAGCCAGGGACAGTGGTACCTGTCTATAATGTAGGTACTAGGGAGACTACAGCAAAAGCCCCCTGAGTTAGAGACCAACCTGGGCTATGTAGCAAATCCTTGCCTTGGAAAAAAAAAATGAGGAAACCAAACCAACCAAACCAACCAAACCAAACCAAACCAAACCAAACCCATAGTGTAGAGGACCTCTCTTACTGGTGGGTGTGAGCAGCAGCCAGGCAGACACTCTTATAGTGTCAGGAAGGGAACCACATCACATCCATACAGGCACCCATATCACCAGGAAGCACTCAGGATGTGTCTGAAAGGAACAACATTTTGCTGACCCAAGGACTCTAATGGTCGAGGCCATCATTATAACATCAAGTGAGATATTTTAAAGAGAAAACCAAGAGAGAAAGTCCTGGAATTACAAAGCATATAAAGTTGGAATCCAAATTATATCATCGTATAGCAGGCTTACCTTTTTATCTTAAAAGCAGTATTCCTCAATAATTAAGCTCTGCTTCTTTAGACATTATATGGTGAGACCTACTCTACCCCCATTTTTTTGAGTATTGGCAACATCTAGGCACAAAGAAGTCTGATTTATTCTTAATTTCTAGAAGAATATTTCTTCTTTTCTTTTTCTCTTTGTTTTTTGAGACTCAGTTTCTCTGTGTAGCTCTGGCTTTCCAGGAACTAATTCAGTGAATAAGGGTGGTCTTGAACTCAAGAGATCCACCTACTTCTGCCTCCTGGGAATAAAGGAGTGTGCCACCACCACCTGACAGACACATTTCTTTATGACGTTCAAAGGACTGAACAATGTTCTACTTAACTCCCACAAAATCTTCTTCCGTCACTTGGTGATGTTAGGTAGTGTCCTGGTTAGTTTTTATTATCAACTTGACACAACTAAGGGCTATCTAAAAGGAAAATCCTCAGTTGAAAAGTTGCCTAGGTCAGGTTAGCCTGTGGCTCTTTCTGTGGGGATATTATTTGTCTTGATTACGAATTGATGTAGGAGGGCACAGCCCACTACAGATAGTACCATCCCTGGGCAGATGTTATTGGATCATATAAGGAAGCTAGATTCGAAAAGGCTGGGGGTGGCTGGGCTGGAAAGAAGGCTCAGAGGATAAGAGCACTGAAAGCTCTTCTAGAAGTCCTGAGTTCAAATCCCAGCAACCACATGGTGGCTCAGAACCATCTGTAATGGGATCTGATGCCCTCTTCGGTTGTGTCTGAATTATTTTTTTGAATAATTATGTATACATAAAATACATAATTATTCAAAAAAAGAGAAGAGACCAGGGAGTCATCCAGCAAGCAATATTTCTCCACAGTTCCTGCCTCCAGGTTCCTACCCTGACTTCCTTCAAGACAGACTCTAATCTAGAAGTATAAGCCAAATAAATTTACTCTTTCTACCTGCAAGCTGCCTTTAGTCATGGTGTTTGTTTATTTTTCTACTCTTTATTGAATCTGACAAAAGATTTCTTTTCCAAGTAAGATGACACAAATTAAAAAGCAGACAACTAGGTGTGTCATTTAAGAAAGGAGTAACGAGCTAGCAAGATGGCTCACTGACTAAAGGTGCTTTCCACCAAGCCTGAAGACTTGAGTTTGTTTCCAGGGGGCCACATGGTAGAAGGAGAGAGCTACTCCTCATTGGTTGTTCTTTGAATATACATTTATATTGTCCTCATGCATATAAATAATACAAATAAATACATGCAATTAATATTTTTTTATTGGAAAGAGTCATGAGTTGAACACAAAAATACAAAATTTCAACAAGTGGCCCCGACCCAGATTAGTGTAGATTACTGTAGGAAGGTGATTTTTTTTTCTTCAGCCTATGGAGACCATTACAGAGAACCATAACTGTTCAAATTTCATACAACAACTGATCATGGGGTACCTGGTCCCAGAGCATATGCTTACAACATAACTTCTATACCTGAGGCTCAGGGACCATCATAGAAGATGGAGTGGAAAGATTGTGAGAGTCAGAGAAGCAGGAAGTCTTCTGTGAGATTGGGCTCCTGGAATTGGAGGAGAATTTCACCTGTGAGATCTTAACTACTTGGCTGCCCAAACAAGGCCAGAACATGGACAACACCAATAAACATGTTAATGTGTGTGGGGGGGGGAATCTTATGATTTCCAAATTACATGGGGACCCCAAGTTCAGACATACCAAGTGCAGTCATCAGGTCGTGTTTATATATTTGTGTGCATTATATATTTAACAATAAAAATAAAAAACATGTTAAGTTTTTGAATGTTTTTTAAAAGTGTGTTTCAGGCATGGATATGAATTTGTTGGCTTCTGAACTGTTCCCTTTGAGATTGTTCTCAGACATTTTATGAAAGGAAGGAGAAAGCATGACCAAGCCCACATCATTTCTTTTTTGTTTTTGTTTTTGTTTTTGCATTGAAGATTGAATCCAGAACTGCACATATCACATGCTGGACAAGTGTTCTTTTTCTGAGCTGTGTCCCCAGAATCCCTAGGCTCGCTATGTCTGTCTGTCTGTCTATCTATCTATCTATATCTATCTGTCTATCTATTTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTATCTACTGTATGTGTGTGGCACAGGGTAGCAACAAGATGTCCCTAACTTCAATCTGTAGATTGGCATCACCAGGCTCTGCTCATGGATACATTTCCTTAAAGACAAATTAGAACATATTAGAATGTAGGCATATTGTCCAGTCACATTTGTTTGGCTGTGACCCTAGCTAAAAGCACACGCCTTTGACGTTTACCTTCAGCAACGCTTCTGCCACAATAGCTTGCCTGTGGGGAGGAGACTGGACCAACCTTCTTCTTCTCTGCCTTTCTCAATTGGTTGGCGACCTTGGATCGGAGGCAGCTTTGTCAGATATTGAAAAACCCTGATTACGAAGCTTATCCATGACCAGGTCAGGGACAAATTTCAAAGAGACGGAGAGCCTACAAAGTGAGAATAAACGACATTTTATTGGACTCTGCTTGAGAGTGAGCTTTGTCTCAGGCGGCTTTTAAGGAAGTGGGGAGCCTGCTTCTTTGTTTTACTGTATAGCATTCTGACAGACGGTGACACGAGCCAGACATCAGCTTTCTATAATCCCCTGTGAAAAGATTAAAATGAACTCATAGCAAGAGACAAAGTTTCTGTTCAAATGCAGCCCGGAGGTGTATAGCACAAAGCCAACAGAGATTCATTTTGTTATTAGCCTTGGATGTTGGTGAGGCAGCTTTCTCTCTCCTGTCTCACCCTGCTCACCCCACTGACCCCCTCACACATTCTTCTTTGTCGACCAATTGGGTGCTGCATCAGCTTCAGCGTGCAAACTTCACTGGGTCCTCTGTCAGTGACGATGCGGAAAGGGATGACTCTGAGATTTGGCTTAATTGTTAGTATCACGTTGTGCCAAACACATTGAGTGAAGTCTACAAAGATAACCTTGGCTATTTATCATTGGATGTCTCCCTTCCCACAGAGAGGAGCACAGGTCTGTTTTCTCTGGGGGACAAAGCATTCTGGGCCAGCCTCCTGCAGCAGCAGACTCTCTTTATGTCTGATTACTGTCAGGCTCCAATTTTCTCATCGATAGATGATGAGGCTGAACCAGATGGTCCCCAAAGAACTTTTGGACTGTGGGGCCTGGTGACTAATTGTTGAGGCTCATACCAGTGAATTTATAGTCTGAGCCTATCGTGGGTGGTTCTACTGGAGAGGAGAACATCTGTGTAAACACTAGCTCATTCTTGGAGCAGGGGACAATGCCCGGAGGAGCCACATGGGCATTGTTTTCTCCAGCCACCTGAGGACAATGACAATTACCAAACTGATTCTCTAGCACACAGTTACACGCTGTGGCCTCTTTAACTATTTGAGATACAACTATAGGAATGGCAAAACCTTCTCATGGACTTTATATTGAAAATACAGCAAAGAAGGAGAGGGAATATTATAACTCACTCTGACTTCATCACGTGCTTCAGCTTCTTTTCTATCTGTAGTTTAAAGAGCTACAAACTCATAGAGATACAATTTACTACTGTTTTCAATTAACAGTATAGCAAAGGAGCTTCGGGTGTCCTCGGAATAGCTTTACTCACAGCACTATCAGTGTTAATCTTGTGTGATCTATTCTGAGGGTGCTGGAATACTAAGAGGGTAGCCATTATTGATCATGTATCGTGCCAGATACAGTGCTAGCTGCTAAACTTCCCTCTTAACTCTTACGTTGTCTCATTTCCTAGAGAACAGTGCTAAAGCTCACAGAAGTCACAGGAGTGACTAGATGCTTGCACATTTACACTGCTTCACATTTCAAAGGCTTTCTTTTTCTTTAGTATAAATAACAATGTATTCTATAATTTTTGCACAGATTCTCTACATTATTTGTTAATTCCAAGGAATAGAATTTTAGAAGTAGAGTTATTGTTTTAAAAAATACAACCAGTCACCAGTCTGGACATGGTATAATATACCATTATTTCTAGCATTTGAGAGGCAGAGGCAAGCCGGTCTCTGGGAGTTTGAAGCCAGTTTGCCCTGCATTGTGACTTCCAGGTCAGCCAGGGATACACAGTAAGACCCTGTCTCCTCTCAAAACAACCACAACAAAAAAAACAAAGAGCATGTTTCCTCTGTGTTTATTTGTCAGAAACATATTCTTGGTGTAGCATTCTTATCTTACTCTGTCATTGAATTTGATTTCCTACATGCACATTTTAATTTGCTTTTGGGAAAAAAAAATCGCAAAGAATGGTTTTCCCTTTGCAGTAGTCCCAGGAGCCATGCAGTTCAAGTATTAGCTACCTATGGTTTCCCTTGAGTCAGACTGGCTCTGTGAGAAATTTAGCAGGATTTGCCACAATTCTTAGAAATCAGCAGCAGCAGACCGTGTTTTAAAATTTTTATTTGAGACTAAGAGAAGAGAAATTAATAATTTAGGACATTTTATAGATCGTGCCTTGGCCTTACAGTTTGTTGTAATGATGCTTATTACTTCAAATTTAGTAGACTTGTTTAAGTGTTTGCTTATCCGGTAACAGCAACCGGCCTTGTGACTTCTGTTTGAATGATCAGTCTGCCTTTCCCTTGACTAG
Seq C2 exon
GCCTGCCTCTTTTGGTTCAAAGAACCATCGCAAGGACAATTGTACTTCAAGAAATCGTAGGAAAAGGTCGGTTTGGGGAAGTGTGGCACGGAAGATGGTGTGGAGAAGATGTGGCTGTGAAAATATTCTCCTCCAGAGATGAGAGATCTTGGTTCCGTGAGGCAGAAATTTATCAGACGGTAATGCTGAGACATGAGAATATTCTCGGTTTCATCGCGGCCGACAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004828:ENSRNOT00000059280:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=21.0)
A:
NA
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(22.2=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]