DreINT0000375 @ danRer10
Intron Retention
Gene
ENSDARG00000086172 | ACVR1C
Description
activin A receptor, type IC [Source:HGNC Symbol;Acc:HGNC:18123]
Coordinates
chr9:5433360-5436094:-
Coord C1 exon
chr9:5435852-5436094
Coord A exon
chr9:5433591-5435851
Coord C2 exon
chr9:5433360-5433590
Length
2261 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGA
5' ss Score
9.22
3' ss Seq
TTTATATGATATTTTCTCAGGAT
3' ss Score
7.53
Exon sequences
Seq C1 exon
AGCAACCACCTGAGGATTCTGGTTGGAGTCAACTGGAAGTAGCAGCAGTAATTCTTGTACCGTCATGCCTGGTGTGTGTGGGTGTCATGCTAGGAGTGTGTGCTATACAGAACCTACGATGCACACACATTAAATCCCTCAAACAGGACCCAGAAGAACCCCTGGATGACCCAACTCTGGTCTCACCTGACAAATGCCTAAAAGAGCTCATCTATGACATGAGCACCTCTGGTTCAGGATCAG
Seq A exon
GTGAGAGCTGGCTGTGCCCATTAAAACAAAAAAAAAAACGCAATTGAAAAACCAAAAAGGAAAATTACGCGTTGTATGTTTGTTTTTCGTAACAACATGGTTATATAACAAAATAGCAGCACAATGCTATTGTTTACTCACCTTTAAAAAAAAAAAAAAAAAAATATATATATATATATATATATTTTTTTATTTATATATATATATATTTAACTTCATTGCAGACAATAATAAAATTAAATATTTCATGTTTTGTCTGGCCAACTTCTTTTCATTTGTAAACATACATCTGCAACACATTCCAAAAAAATTGTTGGGAGAGAAGCAATTTACGGCTCGTACCTGAGTAATTTGGTAAAATAATGAAGTGATTTGAAACAGGTGATGTCAACAGGTGATCGTAATCATGATTTGGTACAAAAGCAGCATCCAAGAATGGTCTAGTCCTTTAGGAGCAAAGATGGGCAGAGGATCACCAGTTTGCTAACAAATATGTGAAAAAACATTGTTCCTCAATGAAAGATAGAAAAAACTGCTTGATATTTTACCTTCAAAAATGCACAGCATAATTAAAAGATTCAAGGAATCTGGAGGCATTTCAGTGCATAAAAGACGAGGGCGCAAACCTAAGCTGAACAACCATGGTCTGCGATCTCTCAGGTGCCACTGCATCAAAAATCGTCACTCATCTATAAGCAATATCATTACATCAGGACTACTTTGGCAAACCTTTGTCACCTTCTACAATACATAGTTACAGATATGGCTACTAAGTACATGCGTTTCTGCATGCACAATACTGCAACGTGCAATATTGTTTTAAAAGCCACCTTTTTGTCAAAAAAATAAATAAATTATGTGCTTTATGGAATGGCCACCAGGTGGCGCAAGGAACAACCGCTTTTCCATTGACTTACAGGTAGTTGTCATACAGTACGTGTTATTAAATATTAAATATTTCCTAAAAATTGCAATAAAAAAATTAAAACAAGACTAGTTTTTAAAATACAAATTTATTACATCATATATCATTAGCAAAAAAAAAAAATTGCAATATATAAAGTTTTAAAGTAAAAAAAAAAAAAAAAACTGGCTACTATCATTTATTAGACTAAAAACAAACTGGCTAGTACATTCAACTGCATCTACTGCATCAAGTACATCTTCAGTCACATTTTGGCCATTTTCAATACAAATAATAATAATTTAAACATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAATGAAAAATAAATAAATAAATAAATAAATAATTCTTAAGATTTTTTTTAAGCCTCTTTGGTTGAAAAAAAAAAGTACATTTGAAAATTCCATCCACAAATGCCAGTGAAAACTGTACTGTGCCAAAAGAAAGCCCTATGTTAACAATGTCCAGAAGCTACATCGACTTGAAGTGCCAACGTGCAAGCAATGTGGTCAGATGAATCAGTATTTCAGGTATTTTTGGGGATAAATGGAAGCCGTGTACTCCAGATGAAAGAAGAAAAGGATAATTCTGCAACCACATTCTGCACACATTACAAAGTACTGGCTGCGAAGGAAGACTATACAAGTACTTGATTGGCCTGCCTACAGTCCCAACCTGTCTACAGTAGAGAATATGTTCGCATTTTGAAATGTTGTCCACTTTAAGACTTGTTTGCAGGAAGAATGGGACAAAATACACCTGAAATACGCTTTTAAGTGTTGTGTAAAGGAATGGTAATATTAAAAATTGGTTACTGCTTAACTGTTTCAGCCTTTTTTGAAATGTGTTGCAAGAACAATCAAATTGGAATACATGTTTGTCATGTTAATCATGAGGAACACAATAAATAATGTTTGCTGTGTTGTTTGCAATAAGATACAAGTCAAAGTAAAATTAAAAATCACTACTTTTTCTGATTTGGGTTTGTAAATGTAATATTAAGATGTAATGTAATTTAAATATTAACATCTATTTTTATTTGCTTTGATGTCCCTTACATTGATTCAAAGTTTCATTCTACACACAAAGCTAGGGATGATTCAGAAGACTGAAAACTTGAGTACATATTTTCAGAAAAATGTGCATAGCATTACTTTATACTTACTATTGTTGGTGTTGTTGTTTTTTTTTGTTGTTGTTTTTTCGGCTAAATATGTTTTAAATCACAAGACTTGATTCCTCACTAATGATGATTATATCTTCTTTTATCCTTTTATCTGACAGTTTATATGATATTTTCTCAG
Seq C2 exon
GATTACCCCTATTGGTCCAGAGAACAATTGCTCGAACTATTGTCCTCCAGGAGACCATTGGAAAGGGACGGTTTGGGGAAGTGTGGAGGGGAAAATGGAGGGGAGAGGACGTTGCTGTGAAGATCTTCTCTTCACGTGATGAGCGCTCCTGGTTCCGTGAAGCTGAGATTTATCAGACCATCATGCTACGTCATGACAATATTTTGGGGTTTATTGCGGCTGATAACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086172:ENSDART00000129308:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.073 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF085157=TGF_beta_GS=PU(58.6=20.7)
A:
NA
C2:
PF085157=TGF_beta_GS=PD(37.9=14.1),PF0006920=Pkinase=PU(36.8=82.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]