MmuINT0015156 @ mm10
Intron Retention
Gene
ENSMUSG00000069601 | Ank3
Description
ankyrin 3, epithelial [Source:MGI Symbol;Acc:MGI:88026]
Coordinates
chr10:69904198-69904510:+
Coord C1 exon
chr10:69904198-69904270
Coord A exon
chr10:69904271-69904447
Coord C2 exon
chr10:69904448-69904510
Length
177 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTATCACTTAAATCATGCAGTAA
3' ss Score
2.31
Exon sequences
Seq C1 exon
ACCATCACGGAGAAGCACAAAATGAATGTCCCAGAAACGATGAATGAAGTCCTCGATATGTCAGACGATGAAG
Seq A exon
GTATGGCAGTGTCCTCGAGGGGTTGCCATGGTGATGAGTGACCCTGTCTCTGTTGCTTCCTGAAGAAAGTCTGTCACAAACGTGTTTTGGGCGAGGGGTGGAATGTTTAGATGTTGGTAGTTGTGTCATGGGAGATGAGTATTTTCATACACTCTTATTATCACTTAAATCATGCAG
Seq C2 exon
TAAGGAAAGCCAGCGCCCCCGAAAAGCTCAGTGATGGGGAATATATCTCAGACGGTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000069601:ENSMUST00000182884:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.960 A=NA C2=0.924
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCACGGAGAAGCACAAA
R:
TCACCGTCTGAGATATATTCCCCA
Band lengths:
131-308
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types