GgaINT0041359 @ galGal3
Intron Retention
Gene
ENSGALG00000003135 | Q90717_CHICK
Description
NA
Coordinates
chr6:10099210-10099547:+
Coord C1 exon
chr6:10099210-10099282
Coord A exon
chr6:10099283-10099484
Coord C2 exon
chr6:10099485-10099547
Length
202 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTA
5' ss Score
7.04
3' ss Seq
TGTTTATTTAAATCATGCAGTTC
3' ss Score
4.82
Exon sequences
Seq C1 exon
ACTGTTACAGAAAAGCACAAAATGAATGTACCTGAAACCATGAATGAAGTTCTTGATATGTCCGACGATGAAG
Seq A exon
GTATTAAATAATAAAAAACCTTCTCAATTACTTTTCAGTCTGTTGTTGTAAGAAGTGTTTTTTGTTGTTTTATTTTTAAGTACTAGTTGGATACGGTCTTACATTATTACTTATGGTCATACATTATTGTTTTACGTTGATTTATTGACTCAATGATAGTCTCTGCTTTTATTTAATTATTTTGTTTATTTAAATCATGCAG
Seq C2 exon
TTCGTAAAGCCAATGCCCCTGAAATACTCAGTGATGCTGAATATTTGTCAGATGTTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000003135:ENSGALT00000004956:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.828 A=NA C2=0.223
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTGTTACAGAAAAGCACAAAATGA
R:
TTCAACATCTGACAAATATTCAGCA
Band lengths:
132-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]