DreINT0029732 @ danRer10
Intron Retention
Gene
ENSDARG00000061736 | ank3a
Description
ankyrin 3a [Source:ZFIN;Acc:ZDB-GENE-060621-1]
Coordinates
chr17:20748441-20748831:-
Coord C1 exon
chr17:20748759-20748831
Coord A exon
chr17:20748480-20748758
Coord C2 exon
chr17:20748441-20748479
Length
279 bp
Sequences
Splice sites
5' ss Seq
AAGGTAATG
5' ss Score
8.99
3' ss Seq
GTGTACTGTATGTTTGACAGCTG
3' ss Score
7.85
Exon sequences
Seq C1 exon
CCAATAACTGAGAAACACAAGATCAATGTTCCGGAGACAATGAATGAGTTCCTCGACATGTCCGATGACGAAG
Seq A exon
GTAATGCTGACCTAGCACTGATCTACACACACATGCACACAGGCACAGTTTCAGTCTTTGTAAACTATATTGGTTTATACTGCTGTAAAGAGCTCTGACACGGGCTAGCTTGGCTAGGTTGTCGAAATATTATTTAAATTAAGTCTCACAGCCAGTGGTATATTCAAATATAGTTGTTTTCACATCTGCCTTCACTATCTGCTTTCATTTTTCTGTGTGACAGTGCGTGTGTGTGAGTGAGAGAGTGTGTGTTTAACCTGTGTACTGTATGTTTGACAG
Seq C2 exon
CTGTGAAAGATCATGAAGCTCAGACTGTTGGGGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000061736:ENSDART00000149630:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]