RnoINT0017408 @ rn6
Intron Retention
Gene
ENSRNOG00000053288 | Ank3
Description
ankyrin 3 [Source:RGD Symbol;Acc:620157]
Coordinates
chr20:20358505-20358810:+
Coord C1 exon
chr20:20358505-20358577
Coord A exon
chr20:20358578-20358747
Coord C2 exon
chr20:20358748-20358810
Length
170 bp
Sequences
Splice sites
5' ss Seq
AAGGTATGG
5' ss Score
9.26
3' ss Seq
TTATCACTTAAATCATGCAGTTG
3' ss Score
3.48
Exon sequences
Seq C1 exon
ACCATCACGGAGAAGCACAAAATGAATGTCCCAGAAACGATGAATGAAGTCCTCGACATGTCAGACGATGAAG
Seq A exon
GTATGGCACTGTCCTGGAGGGGTTGCCATGGTGATGACTGACCGTGTCTCTGTTGCTTCAAGAAGACAGTCCGTTACAAACATGTTTGGGAGGGGGGATGTTTAGATGCTGGGTTGTGTCATTGGGGATGAGTATTTTCATACACTCTTATTATCACTTAAATCATGCAG
Seq C2 exon
TTGGTAAAGCCAGCGCCCCCGAAAAGCTCAGTGATGGGGAATATATCTCAGATGGTGAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053288:ENSRNOT00000077620:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.987 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCATCACGGAGAAGCACAAA
R:
TCACCATCTGAGATATATTCCCCA
Band lengths:
131-301
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]