MmuINT0020234 @ mm10
Intron Retention
Gene
ENSMUSG00000027104 | Atf2
Description
activating transcription factor 2 [Source:MGI Symbol;Acc:MGI:109349]
Coordinates
chr2:73823201-73828678:-
Coord C1 exon
chr2:73828472-73828678
Coord A exon
chr2:73823307-73828471
Coord C2 exon
chr2:73823201-73823306
Length
5165 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGG
5' ss Score
9.99
3' ss Seq
GTGAGTTGTTTCTTCTCCAGAGC
3' ss Score
7.32
Exon sequences
Seq C1 exon
GCTTCTCCAGCTCACACAACTCCTCAGACCCAAAATACAAGTGGCCGTCGAAGAAGAGCAGCTAATGAAGATCCTGATGAGAAAAGGAGGAAGTTTCTAGAACGAAATAGAGCAGCAGCTTCAAGATGCCGACAAAAAAGGAAAGTGTGGGTTCAGTCCTTAGAGAAGAAAGCAGAAGACTTGAGTTCACTAAATGGCCAGCTGCAG
Seq A exon
GTATGGGCACAAGCAGTTTGCTTCTATTTATTAGTTAGCAACATAGGTGTTGCTTGGTTTGTTGGTTTGGTTTGGTTTGGTTTGGTTTGGTTTTTTGTGTGTAGCTTTGCAAGACAGGGTTTCTCTGTGTAGCCCTGGTTGTCCTGGAACTCACTCTGTAGACTAGGCTGGCCTCGAACTCAGAGATTCTCCTGCCTCTGCCTCCTGAATGCTGGGATTAAAGGTGTGCACCACTGCTGTCTGACTAGGAACATAGTTTTTTCTAGATGATCCTGCAAGTATTTTAGGACATGATATATACGACACATATGTAGACTCTGTAGTAAGCCATGGTTTCCTAAACCTTGTGAATTCTGACCTGAAGTGATACCAAACTTTCAACCCTGACACAATGAAGAAATTTTATGTGTAACTGTTTAGTTGTGTGGTACAGAAATACTGTAATAACCTTGCTTGAACTTTATAAAGTTCAAAACTTTTTTTAAAAATCGCTATTTTTTGTTTATTTGTTCTGTTTATTTGTCATTTTACCTTTATATTAACCATAAAGTTGTTCCAATGGCAGTTTTTTACTTTCTTTCTTTGAATTACAATTCTGTTGTTCTTTCTTAAGTAACTAGCACATGTGAAAGGAGCCAGATTGACAGCTTTGGAAACTGAAGGATTCTAATTATCCACAAAATAGGTAATATTCGGCCAGTGGCATAACAAATTATTTCATACTGCCCTGCCGATGTGCCTCAAATACATTTCTTAGGATCTCATGTGTTATAAAGATTTTAAGGCTCCATTCAAGTCTTGGGTAAGATTTTTAATAAAAGTATTAAGGTAGCATCAAATGTGTTTCTTTCCTTCCTTCTCTCCTTCTTTCTTTCCTCCTTCCTTTATCTCTTTCATTCTGTTTTCATCATTTTGCTTTTGACATTGTGAATATTCTCCAGTAGTAGCTTTTGAACTAACAAGTAACTAGAAATTAATAAATTGTAGTTGTTTATTAATATAGGTCAAGTTTTTGTGTGTTTAACAACAGGACTAGAAGTTGAAATTGGGGCTTCAGTGGTCTACCACTAGTGCCTCCTTTAGTAATTTTGAGTTTTAGCATAGGGAGCTAAATTGCCCAAACTTGCTTCAAACTCAAGATCTTCCGGTCTCAGCTTTCCAAGTAGCTGGTATTGTGAACATATGAGTAGATCAATCTTTTGAATTACCCATTTCCAGTGAAAACAAAACTCAGTTATTATGAATATATGCTGTGCGCCTAGATTAGGCAGATCTACCACTACCCTCCATCTTCCACGTCTATGAGACTCCTTAGAACTTGAGATTTCTCCAGGCCATGTGCTTCTGCTCTACTTTTCTTCTTCCTCCTCCTCTGCGTCCTCTCCCTCTTCCATTTTCTTCTTCTTTTTCTCCTCACCTTCCCTTTTATCTGCCCAACCATCAACTCTCCTTTATTTTACAAATTAAGGCGGGAAGCAGGTTTACAGGAAATCACCTGAGTGCTGACCTGTTTCTTGTTCTTAGCCCCTCTACAGGAGAATGGGATTAACATCAAATATAATTACCCCCAGGGCTATCCACAACAGGGCACTTGTTTCTTAAATCTATCTTAAAAGTGTCACAAATAAAATTGTTAAAATACTTAGAAAGCTCTTTTTAACATCCTGTATCGCACTTACCCAAACTAAATTTTATAGCAAGTTTTCATATGTGAGACAGACATTCTTAGAAGCCTTTGTTGCATTTTGCATATTGTTTTGGTTATTTTAAGACGAACTGATTGCCTCTTACAAAACTTATTTTTAGCCATCTAACTTATAATATGAAAAAATGATTATTCATGACTTACTAAACAACATAAACTTCAAATATATACTAGAATTTAGTTACAAATTTTATCGTTATCATCCTAACAAATGAATTTACTAAAAAACTTAGAATAAAATTCATTTCTCATTTAAGTGAAATGAAACATTGTACATATACTGATTTATGTGTAGACCATGAAAACTATTCTTTGCAAACCTGATAGAATATCAATTACTATTACTTACATATCAACAAAGTGATTTAAATGTTTCTTTTTATTGTTCTTAACTAATAAAACTTTTTTAAAAATTTTTTGAAATTATAATTTATTTATACTTTGCTCTCCCTTTTCTCCCTCCAAATCCAGAATAATGCCCTTTCCAACTCTCCTTCAAATTCATGACCTTTTTTTTGTTTCAACAAATTACTACTTCATGCATATATGTATATGCATAGATGTTCCTAAATATAACCTATTGAGTCTGTCTAATACTACCTGTATGTATGTTTCGAGACTGACTTTTTTTTTTTTTTTTTGGTTTTTCGAGACAAGAGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTTTGTAGATCAGGCTGGCCTCGAACTCAGAAATACGCCTGCCTCTGCCTCTGCCTCTGCCTCCCGAGTGCTGGGATTAAAGGCGTGCGCTACCACACCCAGCTGAGACTGACTCTTTGACACTAGACAACCAGTTGGCATATTCTTCCCTGAGGAACACCATCTCTCCCATTCCCAGTTTACCTCAGTTACCTGTAGTTCTTGGTGTATATAGGGTTGTGGCCTTGGGGTCAAGCCATCTAGTTTGGCATGTTCATTGGTGTCATTCCTGTTCAGCTCACATTTGGACAAAATCATGTTGGTGAGACTTTATGGATAAGAGAAGGAATTAGTAGAGTACAGGTGAACTATCTGATCAGGGAAATGAAAAAGAGAAGGGGGCTCCTTAAGGAGAGGCAGAGAGGTTGATACAGAAGAACGGGTGGAGAGGAGGAGGGGAAAGGAAAAAGCAGTGTACAAGCTGTCTGATGGGGAAGTGGGAAAGGGATGCTCTTTAGTAAAGGGGAGGCAGGTCTATACAAAAGAAGAAAGGTGGGTAAAATAACAAAGATGTCTGAAAAAGCCACAACTGGTCATACTATTATCTATTTCCAAAATTTAACTTAAAAAACTATAATATTCCATGCATGAATATACATACACTTTTAATGAACCTTTCTCATCTGGGCAGACGAAGCTTCTTCCAAGAGCCAAAGACCACCTAACAAAACCTCCAATGCCAGACATGAGATACTCTCTTTTTAGTTGTTGTCCAAGAGACTCACAAAACATACAATCTATTGCTGTTGCCCTTGATAAGCCCCCAGAGGTAGAAGGTAAGTTTGTATTGCTAAGACACCGTGCACTTTAGAAGTAGGGCTGGAGAGATGGCTGAGTGGTTAAGAGCACTGACTGCTGCTGTTCCAGAAGTCCTCAGTTCACTTCCCAGCAACCACATAGTGGCTCACAACCATCTGTAATGAGATCTAATGCCCTCTTCTGGTGTGTCTGAAGACAGCTACAGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTGTGTGTGTGTGTGTGTATACATTTACACACACACACATACATAATTCATAAAAACAAACAAACAAAAAAAAGAAGTAAGGCCCAGAGATCCCTCAGCTTGGACTGACCTGTGCCCCTTCCCTGAAGACTAGCTTTCATATCAGAAATCGCCATGCATGCTGCCAAAGGAAGGAGGCAACCAACAATTTACCCAGCTGTGATACCTGTGTACCACAGCATGACACAATAACCCTGATCATGCAGTAGTGACATGCATACTTTGGTAGTAACCAACTACTCTCTAATTTGACTTAAGACTTAAGAGGGAGATCAAGAGGTACTGGCAACCTAGCTCGGTGCTAGTGAATTCATGGTTATTGGAGAGAATTCTACAACCACCTATACTTTTTTTTTTATGTGCATTGGTGTTTTGCCTGCATATATTGTCTATGAGAGAGTGTTAGATCACCCTGGACTTGGAGTTACATGCAGTTGTGAGCTGCTATGTGGATGCTGAGAATTGAACCCTCGTCCTCTGAAAGAGCAACCAGTGCTCTTAACTACTAAGCCATCTCTCCAGCTCTTACCATCAATTTTGAAGTACAGTAGTCTAAGGATTCTTTAACCTCTTACTGATTAGGGATATGCTAGCATAAATTGTGTTCTGTGCTTTAATACAGTGTTGCTAGTTTTGTTGGGCTGTAGAAAACTATTTGTACTTGATTTTTTAGATTGCTTGACTTTTTTTTTTTTCGTGGTTTTGTCTTTAGGAAGGCCTAAACACTAATTTGCTAAAAGCACATTCAGCTTTCTAGTTTAAGAGGTAGGGTAGAGGTTGGGTTTGGTGATGCACACTGAATTATAATCCCAGCACTTGGGTCTAGGGCAGGAGGATTGCTACAGTTTAGAGGCAAACCTGGGATGCACTGATACCCTGTCTCAAAAAGTGAGATGTCAGTAGACTGTGTGCCTACAATTTTATGTATGCCAGCTTCTTAAATATTTGCATTTGTTAATACTTTGGGTTTCATGGGTGAAACCTAGATGGTTATAGTTAATGTAAATCTAAATGAGAAGAAATATTCATAGTGACTTTTTTAATGTTACTAATTTATTAGGTCCATAGTATTTCTTAACTCATGAATGTTGGTAAAATAGTCATTCTATTGTAAGGAATAAGACAGAGCAGCACTGATATTAAAATTTAGATGCCTATATCACAGGCAACAAACCCATTTAACAGCACTGTCACTGGTTCTGGTGCCTAGCACAGTGCTCAGCAATAAGTATAAAGACCCGTGAGTCTTGAATAAGTGTAATTTCTTTTTTTAAAGTATGAACTTGCATGATTACATTTCCAGGATACATTTTTAATTTTTAAAAGGTGAATGGAATCAATGAAAATTCATTGATTATTGATATTTTTAAGTTTTCAAATAATCAGAAGAGCATATGACATATGTACAAAAGAGCTCTTCAGTGAGTAACCTATAATGCATACGATTCCCGTGGCAAGTAGTGAGCAAGGCTACCCAGTTATGGTATTCATATGATTTTAGTTTTTAAACTAAAAGACTTACATAGATGCTTAAGCAAACCAGTGTATACTGATTAAATTTATTTAAACAGCATATGTCCCTTATTGTTCTGCCAAAGAGATCCAGTTTTCATCCTGTAAGCCTTGCTTTCTTTAAATAGTAAAATATGTGTCTATCTAATGCTGCTAAAGCATGTGAGTTGTTTCTTCTCCAG
Seq C2 exon
AGCGAAGTCACCCTGCTGAGAAATGAAGTGGCCCAGCTGAAACAGCTTCTTCTGGCTCATAAAGATTGCCCTGTAACTGCCATGCAGAAGAAGTCTGGCTATCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027104:ENSMUST00000112016:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.952 A=NA C2=0.703
Domain overlap (PFAM):
C1:
PF0017016=bZIP_1=PU(70.8=66.7)
A:
NA
C2:
PF0017016=bZIP_1=PD(26.2=47.2)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types