MmuINT0026493 @ mm9

Intron Retention

Gene

ENSMUSG00000057093 | C030039L03Rik

Description

RIKEN cDNA C030039L03 gene [Source:MGI Symbol;Acc:MGI:2148237]

Coordinates

chr7:28483672-28491501:+

Coord C1 exon

chr7:28483672-28483770

Coord A exon

chr7:28483771-28487398

Coord C2 exon

chr7:28487399-28491501

Length

3628 bp

Sequences

Splice sites

5' ss Seq

CAGGTGAGT

5' ss Score

10.67

3' ss Seq

GTTCTCTCCTTTTCTTTCAGATG

3' ss Score

12.05

Exon sequences

Seq C1 exon

TGGGACGTTGTATTTCCAAGCCAGATCTGATCGTCTTACTAGAGCAGGAGAAAGAGCCCTGGATGGCTGTGAAGGAAGAAACAGACAGGCCGAGCCCAG

Seq A exon

GTGAGTAAGAGTGAAGTGATTCATTATTGGTTGTGTGCGCACACACGTGTGCAGGTATCCTAAGAGGCCCTAGAGAGGGTCAGCTCCCTGGGCTGGAGTTATAGGGGCTGCTGGGTCTCTAACCCAGGGCCTCGGGCAGAGCTCTCAGAGTTCTTGACCACTGAACCAAAGCCAAGACGGTTTCAGCAGAAGTGACAGCTGTAACGCAGGGAGGGGCACCAAATGTCTGAATTCTGTGTCCTCAAAGATGGTTCTCACCTTCCCGAGGAACCATCACACTTCTTGGCCCTGGAGTCAGAGGCAAGTCAGGGACAGGGTGGTCTTTCCTAGTCCTTTAACCCTACGTCTCTCCCGTTTTTATTACTAATAAACAATCAGGGAGATAGAGGGTGGTGTTATCATTAGACTACTTCTTGTTGAACAGGGGTGTTGAAGTCCTTGGGGCAAGGTTGAGCTTCACCGTGAGGGTAGAATTGGGAGTGGCAGGGCTCTGGCGTCATAGGTAGGAGCCAGTGACCCTTTAGTAGCAACTGACTAAATGTTTATAAAATGTTTTGCATCTGTTGTTGAAGAAATCTAGACAAGAAGTTCATGAGACAGTGTGTGGTTAGTACGATTAAAAAAAGGAAGAGAGGGCCTGGAGAGATGGCTCAGTGGTTAAGAACCTCTTTTAGAGGACCTGAGTTCAATTCCTAGCAACCACATGGTGACTCATCTGTAATGGGATCTGAAGCCCTCTTCTGGTGTGTCTGAAGATAACAGTGATAGTGTATTTCATATACATAAAATAAATCTTAGAAAAGAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGGAAGGAAGAAAGAAAGAAAGGAAGAAAGAAAGAGAGAGGGGGGAAGGGAGGGAGGGAGGCAGGGAGGGAGGGAGGGAGGGAGGAAAAGAGAGAGAGCTTCTTGGTCTCCGAGTCTTCTCTGATCTTTGCTTCACTGAAGAGAGAGAAAAAGAAAAAAAAAGAAAGGAAAGGAAAGGAAAAGAAAGGAAAGAAGGACAAGGAGGGTTAAAAAGGTAAAATCAGGCTGGTGAGATGGCTGGAAAACTGACTGCTCTTCCAGAGGTCCTGAGTTCAAGTCCCAGGAACCACATAGTGGCTCACAACCATCTGTAAATGGGATCTGATATCCTCTTCTGGTGTGTCTAAAGACAGCTACAGTGTACTTATATAAATAAAATAAAAATTCTTTAAAAAAAGGAAGGAGGAGGAGAAGGAAGAGGAGGAGGAGGAGAAGGAGAAGAAGAAGAGGAGGAGGAAGAAGAAGAAGAGTAGAATCCAGTTCCATACTGGACTGTCAGAAATCTACTTCTTGGAGTGGCCAGAGGCAGCATCACACTGTTTCTTAGCAGGGTTCTTATTTATTTATTTGTTTATTTTTGAGATCATCTGCAGTTGTCAGTGTGGAGGAAAAACAGTAGAGTCATTTTCATTCAGCGGAATGAAGGAGTTGTTTTCTAGAAGTTCTTAGATCTTGAGGAAATCATTGTGGAACACTGATTGTTTTCTGTGACTTATGCACTTGTTTTTCTAGAGGAGTTTCATCACCTTTGTCTGAGTTTAGTTGTAAGACGTTCCTGGCAAACATGGGCCGTCTTTCGTTGTTGAGTACTACAAACTGCACATTAAAGACTGAAATTGCAGGGGTGGGGGAGGTGCTCCTGTGACTTTAGTTTTTGTTTTTTTTTTTTTTGTTTTTTTTTTTTGAGACAGGTTTCTCTGTATAGCCCTGGCTGTCCTGGAACTCACTCCGTAGATCAGGCTGGCCTCAAACTCAGAAATCTGCCTGCCTCTGCTTCCCAAGTGCTGGGATTAAAGACGTGCAGTACCACTGCCTGGCGAGACTTGCCTTGTTTAACATCCATGTCTTAACTTGCCGATTAGAATGTCACTTACCCACATACATGCCTCTTTTTGCCAAGTAGGATGTCAGTTCCCAAGGAGGTCTTGGGAACTTAAACTTTATTCAATCTCTACTCAAAATAGAAGTCTTATTTCAAATAGCTTCTTATATTGCTGCAGGTGTCTCTTTTACATCGGAGTCCATCCCTGGAGCAGCTTATAAAAGCAAAACCCATAAAAGCCTATATATGTGGATAGGAAGTGCTGCTGGCTAGTTGGTTTGTGTCCAAGCTTATTGTGGGTAACTATACAAAGCAGTTCTACTGACTTGAGTTGTGATTGGTTTCCAAGGGCACAGAAGATAACAGAGTATGTAATCAGCTTGATCATGATAAAGTTTCCTTATAACATTAGGAACAGCACACATTGGCAGGCTAGACAGGTAGCAGTCGGGATAAGATGGAGCTTGTTGAGCGTCGGGGGATGATGATGAGCAGGTGGGCTGTAACGTGAGAGAGCCTTGAGATGTGAGAGGCCCAGGCTGTTGAGAGCTGCAGCTCTAGCCACCTCATCAGCTTGGTTACTTCCCTTGGGGATAGCGGAACTGTTTGCTTGGCGTGGTCGGCAGTGGACAGCTCCCATGTCCACAGGGAGATGGGAGGCTTCCAGCAGGACCATAATTTGGTTAGAATTGATTATGGACCCTCCTTTTGTTGTTCATAGCTTGTGCCTTCCAATTTAGCTGCATGTGACAAGAAAATGTGAGAAGCATTGTAGAGTCGTATAAAGGTTTGGGGATTGTCCCTTTGCTAGTTAAAAGGTCAGGCAAGAGTTGTTAATTTGGCCTGTTGGTTTATGGTTTGGGCTGGAAGGGTCCGACTTCCACCACTCGGGTATCTGAAACAGTTGCCTAGCCCGTATGTATGCCTTCAAGGAGCTGCCATCTGTATACCATGTGTAAGTGGCCTGGGGTAGCCACTTATCCTGTATACACATGTATGTGTATAGGATAAGGTAAAAACTCTTATATTCTCAATGCAAGAATGAGATGGGGAATATTCCAAGACTGGTCATGGAAGGAGACTTGAAATGTTAAGAGGTGGCCATAGCTGAAAGGTAAGTGTTGTGTCCTCCACCAAAGCTATCTCAAAAGAGAGAATGCTAAGGGAGTTTGGAGACCTTTGTATGTTATCAGGTGGGGCAGGTGGGGAGGAGGGAAAATATTAATGCCATTGATTCACATGTTAGAAGTTCAGCTGCCGCCAAAGCTCTCATACAAGGTGTCCATGCTTGAAGGGCAAGGTCTAATTTTTTTTCAGTAAATATACAGTGGGCACAAAGGAAGGTCCCAGTTGATGACCTAGGACCCTGAGGACACATCCCTTCTTTTCAGTAGCATAGAGATCAAACAGCTCATTTCCAAGTGGACAGTAACACAGTGCCATCAGGTTAGAGCGACTTGTCACATCCCAAACAGTATGTATTTCCAGTAGGATACAAAGAGGCACGTAAAATTGTTTCACTGTAGTTTGTTATAATCTCATTGAGCATACATATTCCTGCTTCCAACCTGTTCTACGGTAAAGCGTATTATCTTACATAAACTTTGCTTATTGCTGCTCTCCCTGCTCTTGTTCTTAGAAAGTACTTTAGAGTCTGGCCATTCATTTAATGGAGCATATGAGCGTATTACAGGAAAATAAATTATTCTTGTTCTCTCCTTTTCTTTCAG

Seq C2 exon

ATGTGGAGACATGTGTTGAAGCTGAAAATATATCTCCGGAGAATCATATGTCTGATGTAAATTTACACAAACAGAGCATAAGGCAATTCAGTAAAACTTTTGACCTTAAAGAGTCTACTTTTAGTGATGGCCCCAGCTGTAGTACATTCAAAGGACTACAGGGTTATCAAGGAGATGCTGATGAAAGGGTTACTAAGAAGGAAAGAGTGCCTCCTTGTACCTGCCAGACTCTTGCTCACAATACAGAAAAGGCATATGAGTGTAAAGAGTGTGGGACGTGCTTCGATTGTAGTTCAGCTCTTACTCAGCATCAGAGTGTTCATGCTGGAGAGAAGCTCTATGAATGTAAGGAGTGTGGGAAGGCCTTCAGACTCCCCCAAGAGCTCACAAGGCATCAGAAGTCTCACAGTGGTGAGAAACCTTTCCAGTGTAATGAATGTGGAAAGGCTTTTCATCTTCCCGACCTGCTGAAATATCATAAAGTCATTCATACAGGTGAAAAGCCTTTTGAATGTGAAGTATGTGGGAAGTTCTTCAGCCGTGTCTCCAGCCTTGCTGAACATAGGATTGTCCATGCTGATGTGAAACCCTATGAGTGTAGTGAGTGTGGGAAAGCCTTTAAACGTCGCTCAGACCTAATGCAACATCAGAAAATCCATTCTGGTGAGAGACCCTTTCAGTGTAAGGACTGTGGGAAGGCCTTCATTGTTCTGGCACAGCTCGCTCAGCACCAGAGCATTCACACTGGAGAGAAATTGGAATGTAAGCATTGTGGGAAGATATTTAGTAGTGGTTTTTACCTTGTACGACACCAGAGTATTCACACTGGTGAGAAACCCTTTGGGTGTCATGTCTGTGGCAAGGCTTTTAGGCTTCAGGTATACCTTAATGAGCATCAGAAAACTCACACCGATGAGAAACCTTTCAAGTGTAAGCTGTGTGGGTCAGCCTTTAGACGTAAATACCAGCTCAGTGAACATCAGAAAATCCATACCAATGTGAAACCGTATCAGTGCAAAGAATGTGGGAAATCCTTTCGTCGACGATCAAATTTTACTGAGCATCAGAGTATTCACACTGGAAAGAAACCCTTTGAATGTAAGGACTGTGGGAAGGTCTTTAGACTAAATATACATCTCATTCGACACCAGAGATTTCATAGTGGTAAGACACCTTTTGAATGTAATGAATGTGGAAAGGGCTTTCATTTTTCCAGCCAGCTTAATTACCATAAAACCATTCATACAGGTCAGACACCTTTTGAATGTAAAGAATGTGGGAAGTCTTTCAAGCGCATCTGCAGCCTTTTGGAACATGGGGTTATTCATGCTGCTGTGAAACCATTTGAATGTAGTGAGTGTGGGAAAACCTTTAATCGTCGCTCAAACCTCATACAACATCAGAAAATTCATTCTGATGAGAGACCCTTTGAGTGTAAGGACTGTGGGAAGGCCTTCACTGTTCTGGCTCAGCTCACACGACACCACACTATTCATACTGGAAAGAAATCATATGAATGTGAGCAGTGTGGGTCAGCCTTCAGACTCCCGTACCAACTCACTCAACATCAGAGAATTCATGATGATGTGAAACCATTTCAGTGCAAGGAATGTGGAAAGGGCTTTGTTCGTGGTACAGCTCTTAGAATCCACCAAAGAGTCCATACTGGTGAGGCCCTTCCAGTGTGAAAAATGTGGAGAAGGTTTTTCCAATATCATTACCAATTTCTTGGACATTTTAGAATTCATACTGGCAAGAAGCCTTATGAATGTAAAGAATGTGGGAAGGACTTTGCTCGTGGTGGAGACCTTAACGTACATCAAAGAATTCACACTGGTGGGAAACCATACCAGTGTTAAAAGTTCAAAATCAAGCTTGGTTTGAAATGCTAAAATTCATATTAATAAGAAACCACCTGGAAAGTCCTGGAGTAATTCTAAGATAGCTGAATTCATACTGGTAAGAAAATGTTAATCCGTCTGGTGGAGAATAAGACCACACCACTGCCGGGTGTGGTGACACACACCTTTAATCCCAGCACTTGGGAGGCAGAGGCAGGCGGATTTCTGAGTTCGAGGCCAGCCTGGTCTACAAAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAGACCCTGTCTTGAAAAACAAAAAACAAAACAACAACAATAAAAAAGACCACACCACAGTTTAAAGCCAAGTTTGAAGTAGGCTTTAAGTAAATACTGGCCAGGTGATGGACTCCCTGGCCAGGTCCAGCTTTGGGTTTCCAGAAAAAACCATGAGTCCCACCTTGCAGGGGCTTAGATAGGCACCCCCACAAGGCCGCTGTATTTTCCACCAGGTACAAGCAGGGGTAAGCATATAATCTGACTTGTTTCCTACTTAGGTACCTCCTGCCTACATATCAAATGGGGGGCTGGGTACTTCCTAATATATTTCCTTCTCATGGGCTTCCTCTCCAACCTGTGATGAAGAACATCTGGTATAGTTGGGGCAAACAAACTTGTTAAGGGGAATGAAAGTGTGGCTTGTTATTGCCCATAAACAATAGCCTGCAGTATTTCAGGAACTATTTGACCTTGGGTAAGGGGCTTACAGGCTAGCAGCATTTTTGTTTCCTAGGTCTTAGGCACAGTAATTAAAACTTGGAACGTAACTTTGGCTCTTACAAAGCTCTGTGAAGGTAGGAAATGCGGATAATGTTTAGATTTAGTTCAGCCTTTACTACACACTGGAGAATTCATACTGGTGTGAAACCCTTATCACTGTAAATAACATGGAAAGACCTCTAATTAGCCCTCAAGCCTTCTTCAAAATAAAATAATCCATGCTGGTGTCAAACATGACTGCAAAGGAATGTGGGAACAGAGACCCCATGGATGTCAAGACTGTGGGAAAGCCTTTATTGTAAATTGTGAGCTTATACAAAATCAGAAAATCCATGTTCAGAAGTCCTGTGCATGTAAGGGAAGTGGACAAGCTTTTGTCTGGAAATTTTACTGATCATCAGAGAACTCATATTGGTAAGATTGTGACTTAAAAGAATGTAGGAAGGACTTTAATTTGCTCTAGGATTTGGTCAATATCTGAATATTCATATGCTCTTCGTGCCAAGAAACCCTTTGAGAATGAGTGTGCCGAAAGTCTGTGTTTAGAGAAGATTCTCTGGTGAGAATGTTCTTGACTTACTCTCCTCTTGTTAATTCTACACCCTTAACGAAACATTACTCAGTCAATTTAGAAAGAGCAGTTATTGGAAGTAGGATTATTTATGGTATCTTTTTTGTCACCATTAACACTAAGGGGCTCCTGTGATATTAGACTGGATGTTTCTTTCGGCATAATTTGTTAATGGTGAGCATGGTACCAGGCAGACGTGTGGAAACAGGGTTATAATGGATAGAGAATACTTAAGAGTATTTGGTATGTTCTGTGAAGTAGCTTCTACAGTGTTGGTGCTCTCACGGGCGTTACTGTAATGGAAATGAAAGACAAGCTGTGTCGCAGATTTTTTAGAAAAGCCTCATGCAGTCCTCCAGTGTTAAATTCCAAATACTTCCCTATGGGTAAAATCTAATAGATGAACAGGTACACACACACACAAAATCTTCATTCCCAATCCATTCCTTAAGCTTTTGTGCAGAGATGTCAAAAACACAGCTGTTGGTGAATAAGTACTCTTTAAAGGAGTTAAACACATGTAACTTTCAAAAGCTAAAATCATGTAATTTATGCTCTCTGCCCAGACATTAAGATAAAAGACATTTGTGACAGGGAAAGACAGTGCAGTCTCCTCCATCTCATATTTTTGTGGAAAGTTACCCAATTCTATGAACCAGAGGTAAAGCTGCCCTTGCTAATTTATCATGGCTTCTGTCAAACTGCCACCATGCTCAAATCTCTCCTTTCAGCTAGCCTCTTGTCTTGGCTTCTGTTAAACTGCCTGCTTGTGCAAAAGCTTCCCCTGCAGCTGTTGAACAAAATAACAGAATGTAGTCTTTGCTTTTAATAGCCCCTTACTCTAAACACTTGGAGCTATAATTAGATCGTATATACCTGAGTGTAGTTCCAGACAACTGGAATAAAGTCTTTCAGTTGGCTAA

VastDB Features

Vast-tools module Information

Secondary ID

ENSMUSG00000057093-C030039L03Rik:NM_001112731:5

Average complexity

IR-S

Mappability confidence:

NA

Protein Impact

No protein impact description available

No structure available

Features

Disorder rate (Iupred):

C1=0.294 A=NA C2=0.046

Domain overlap (PFAM):

C1:

PF0135222=KRAB=PD(0.1=0.0)

A:

NA

C2:

PF127602=Zn_Tnp_IS1595=WD(100=5.5),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF0172213=BolA=WD(100=13.7),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF097235=Zn-ribbon_8=WD(100=7.1),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF127602=Zn_Tnp_IS1595=WD(100=9.1),PF134651=zf-H2C2_2=WD(100=4.6),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.4),PF134651=zf-H2C2_2=WD(100=4.6),PF0009621=zf-C2H2=WD(100=4.1),PF134651=zf-H2C2_2=WD(100=4.4),PF127602=Zn_Tnp_IS1595=WD(100=9.2),PF134651=zf-H2C2_2=WD(100=4.6)

Main Inclusion Isoform:

NA

Main Skipping Isoform:

ENSMUSP00000075755