MmuINT0028503 @ mm9
Intron Retention
Gene
ENSMUSG00000041570 | Camsap1l1
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:138189857-138190623:-
Coord C1 exon
chr1:138190587-138190623
Coord A exon
chr1:138189999-138190586
Coord C2 exon
chr1:138189857-138189998
Length
588 bp
Sequences
Splice sites
5' ss Seq
ATAGTAATT
5' ss Score
0.21
3' ss Seq
TAGAACTCTTTCTGTCGTAGGCT
3' ss Score
7.56
Exon sequences
Seq C1 exon
TACTTTTTGCCACTCACCAATTTTGATAGCTCTTATA
Seq A exon
GTAATTATTTTTTTCTCAAATGATACCTCTGCTCCTCAAAAGCTTCAAAAGCTTAATAAGTCTTTGAGAACTTTTAGATTTTCCTCTAATATTGAGTAAATGAAAATCTAATCAGTAAATGAACAGAACTGATTTAAATGCAAAGTGTTCAGATCTGTTTTGTGGTAGTGTAACTATTGTAAAGTAAATGCCATGTGATATTATTGCTAAAATGTTATCTTAAGTTTATAGATTTGAAATTACTAGACTTTAATCCCAGAACTCAGGAGGCAGGGGTAGGTGGATTTCTGAGTTTGAGGCCAGCCTTGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCAAAAAAAACCAAAAACAGAGAAAGAAATTAGTGTTATTGCTGTAAATTTAACCTTGGTAATATATAGTATTGTTGCCCTCTCCCCACAAAAAAAGCTGTGTAGTTGGGAATTCTTCCTTCTCCTGTTTATATTTTCTAACGTGACTAAGAACTAGAATCTATAGTTCTGGTTTTGTCTGCTTGTTTTCCTTGAATTGTGTAGGATTTATTTAGAACTCTTTCTGTCGTAG
Seq C2 exon
GCTCGTTACAGGAAGGAACAAACACTGCTTAAGCAACTGCCTTGCATTCCATTGGTGGAAAACTTGTTGAAGGATGGGACCGACGGCTGCGCACTAGCTGCCCTCATTCACTTCTACTGCCCTGCTGTTGTCCGGCTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570-Camsap1l1:NM_001081360:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(7.3=100)
A:
NA
C2:
PF0030726=CH=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: