BtaINT0031089 @ bosTau6
Intron Retention
Gene
ENSBTAG00000008153 | CAMSAP2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:HGNC Symbol;Acc:HGNC:29188]
Coordinates
chr16:81303941-81306796:+
Coord C1 exon
chr16:81303941-81303973
Coord A exon
chr16:81303974-81306654
Coord C2 exon
chr16:81306655-81306796
Length
2681 bp
Sequences
Splice sites
5' ss Seq
CCTGTAAGT
5' ss Score
7.52
3' ss Seq
ATCTCTTTTTTATATTGTAGGCT
3' ss Score
10.03
Exon sequences
Seq C1 exon
TCTCCTTCCAAATGGTTTTGGAAACTGGTTCCT
Seq A exon
GTAAGTTTACCCAGCTCCTTCAGCTCACCCTCCAGACATCATTGCAGAGTGTCATTGTATTGTTGATGTCGTGCTGATACGGTCATTTCATATAACTCCATTAGTCACGAGTGGAGATTGGATTGTAAGGTCTTTGATCATAGTGCAGAATAGAAAGACCTAAAAAAAATCTAGCCAAAATTTGGATTAGACGCTTTAAAGATAATTAAAAGTGTAAACTAGTCTGTCATTACTTGGCAGACCATAAGTAACTAGTAAGAAGAAAGTGTGGGTATAGATTTGTACTGGTTTTAATAATGTCAGTAAAAGTGAGTATGAATTGCACACGTAAATTATTTGTATTATCAAGTCATCTTTTTGAAAGAATCATTTCCTTTTGGCCTGACCTATAGAGGATACTGTTTGTGTAATTTAAAAAAGTGACAGGTTCTGTGTCCCTCTCATTACTGAATCTAAACTAGTAACAGATTCAGTTCTGGTTTGACTACAAGAGTTGATCTTTCAGTGTGAACTCTGGGGGTTCAACCACTTAAATGTTTTTCACCCTCAGAAACAGACATGTAACTTAGAAGTCCACCACAATTTTGAAAGATCGAAAATACATCCCTCTTAAATGCCAGATGTCTCAGTTTGTAGAAAGAGCAGTGTGTTTGTAAAGCGCCGAGCACACTCCAGAAGTTCTGGGAGACCCACAGGACTTCAAGATTGAAAGTTGGTTTCCCTGGTAGGCCTTCTAGGATGTAATCTTCAGGAAGATGTTGCGGCCGGCCACTTGCAAACCATGAATCGTCTGGTCCAGACCGCAGGCCTCGTGGCCGCAGCCTCGGGGAGCTGTGTGCGTGTGTGCGCGGGTTGCCGTGCCCCTCGGTGGAACGCTGCAGAGCACAGCACACAGCTCAGTCCTTTGTTCCGTGACCCTGGGCGCTCGGCTCAGTCCACTTCCGGCCATGGGCCCTGGAGGTCCGAGAAGTCTGGCACGGAGCCAGCCACTGTAGAGCATTTCCAGAGATAGTATTCTGTTTCTTAATGGCCCAAGGAAGTGGGGCTGGAGGGGCCTGGAAGCCACAGGGGCATCGGAAGGCTGGCGAGGCCCCGGCTGCCACTCCCCCTCAGTCCTGATTTTCATGCTTGAGTTTTAAACTGTCCGCCAGCAGCTCACTGAGGATGCTTACTAACGATTACGTAAAAACACAAAATCAACTGAAGAATTTCTCTAGTGCACTGATGCGATTTTTCCTGAATATAGGTGCGCTCTACCATTAAATACAGATTATAGTCCCTACTGATTCATAAGAACAATCTCCTCTGAAATTCTTCACATGGGAAAATGTTCCATGAATCTTGTTCTTGAGTAGCCAGTGAGGGGTATATAGAAATAAATATTTCCCCTTGAATGTGTGTGCTTTTCTGGGGAAAGTCATTTAAAGGAAATCTGACTTCACCACCAAATAGTAAATCTCTTTCAGTAAGTAATTTTTTGTTTTTATTCTCACCAGAGTATTATATTTCATAATTATACTTTAATTATGAAATAGAGATGATCAGTTTAGATAGAAGAAAAATTAATTTTGATTTCTTAAAAAAAAAAACCTTGTATTTAAATATCAGTGACCGCTGTAATTATAAATTTTGCTAATAGTTCAGTGTGCAATTTTCATTAAGTCTTCAGCATGATTTTTCTTGGCTTGAGGAGAGCTAGTAGCTAAAGACAGCTGACCTCTGGTGACACTCGCTGTGTGCCCATGTGTATGTCGCGCATGACGTCATCATCTTTCTTAGTCCTCCGTGTCCTGTGAAGCAGGCACTGTGACTGCCCCGGTTCACAGATAAGGAACCGAGAGATGAGCGTTCAGGTAACTCGTCCAAGATCCCAGAGCTGAGAAGTGGCAGGAGCAGGATCTGAGCCCAGGTATTTAGTCTGACTTAAGAAGCTCCTTCTCGTAAACTCTCAGTTTTACAGCAGGTCTCATTTTTAGGGAACTGTCTTACAAATTTGTATCACTCGCACCAGCCAGTCTTTAAAAAACAAGAGCTTCTTCTTTTCTGAGAGGGAGCAGAAACCCTTATACTTGCTCTGCTTTGGGTTAGGGTAGAAACCTCATCCAGGAGGGTTTTCTCAGTTTCACAGTGGTTACACTTTATTTGCATTGTCTCAGCATTCAGATGAGAAGCCAGGATTTCTTTGTGGTCTGATTCCAGCTCCTTAGAGTGACAGTTCTTATTGCAAGGCCTCCTTTCGGAGTAGTTTTACATCCTCTGGCCGTCCCTTGACGCTGATGACTCCTCAGTCTTTGAGCTCCGGTCTTAATCTTTTTACACAAGAGCGTGCTGTCTAAGTTAAGTCTAATGTTAAAGCAAATTTTATCATCTTCAGAGCCACAGAACTGATAATTTGGACATTTCAAATGTCCAAAATCCATTCTGTGATGCTTTTATATTTAAATTCTTGGGCTAAGTCAATTCACATAAATGAGCCCTGTGGCGTTCTGTTAAGCACTTAGTCTTCAGAACTGTAGTGCTGTTGGCAAAGACAGGTCTAGTAGTGCTGTTCAGGAGAGAAGGATGTGGCTGCGTGGCTGTTGTCTCTGCCGACTTACACGTTATTACTGACACGGGGCCTACGGTGCTGTGTCTTTCCTGTACATTGAAGTACTTACTTTGATCTCTTTTTTATATTGTAG
Seq C2 exon
GCTCGTTATAGGAAGGAGCAGACCTTGCTCAAGCAACTGCCTTGCATTCCGTTGGTAGAAAATCTGTTGAAAGACGGCTCAGATGGCTGTGCGTTAGCTGCCCTCATTCATTTTTACTGTCCTGGTGTTGTCAGGTTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000008153:ENSBTAT00000010723:10
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF119713=CAMSAP_CH=PU(48.8=85.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development