RnoINT0028787 @ rn6
Intron Retention
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53175500-53179171:-
Coord C1 exon
chr13:53179139-53179171
Coord A exon
chr13:53175642-53179138
Coord C2 exon
chr13:53175500-53175641
Length
3497 bp
Sequences
Splice sites
5' ss Seq
CCAGTAAGT
5' ss Score
9.09
3' ss Seq
TAGAACTCTTTCTGTTGTAGGCT
3' ss Score
8.66
Exon sequences
Seq C1 exon
TCTCCTTCCAAATGGTTTTGGAAACTGGTTCCA
Seq A exon
GTAAGTTTTCCTCACTACTTCGGTTTTCTCTCCAGATTATAATGGTATTAGTGGTATTAATCATAGCTTGCTGGTATCATCATTTCATACAAGTCTGTTTGTCATTAGGTAGAGGGATCAGGTATTTTCATAATATAAAAAAAACAATGGGTCTGGCCAGTTTTCCGGGCAGTTTAAAGTTTGTTCATCACAGCACTTATCATTACCAATGCAAGCATTGATACAAAATCTCGCTAGTGGGAAAAAGTTTTCATAAAAGTGAATCCGAATAATCTTTTTTTTTTTCTTTTTTCTTTTTTCTTTTTTTCGGAGCTGGGGACCGAACCCAGGGCCTTGCGCTTGCTAGGCAAGCGCTCTACCACTGAGCTAAATCCCCAACCCCCCGAATAATCTTTTAAGTTGCCTGAATGTTTAAATTGTTTTGGGCAAAATAATTTCCTTATTATCCTATCTGAAGACAACACTTTACTATTTTTTTTTTTTTCCGGAGCTGGGGACCGAACCTAGGGCCTTGCGCTTGCTAGGCAAGCACTCTACCACTGAGCCAAATCCCCAATCCACTTTACTATTTAATAAAAATCAAAAGTGTATCTGTATCCTTACCGATATTGCACTTATACTGTATAACACTGAGTTGACCTGATGATTGATATTTCAGGGTGAAGTATGGGCAGTTCAAGGTTCTAAGACCTCTTAGGCACCATCCTGATAAAAACATACAGCCTGGTGTGGGTAAGAGAGATGGTTCAGCAGTTAAGAGAACTGGCTACTCTTTCCAGGGACCTGGGTTTAACTCCCAGCACCTGCTAAGCAGCTAACACTTAGTCCATAGCTCTAGTCCCGGGATCCAACAGCCTCTACTGACATCTGCAGGTACCAGGCATACAAGTGGCTTACCACATACACACACACAAATATATATAACATGTATATTATGTTATTATGGTGTATATAATTAAAATCACATATACATATATAATATTAAAATATACCATTTTTAGCCATTGATTTAAAATATGGTGATTCTTTTGAATGCCAGACTTTCGAGTTTGTAAAAAGACTATGCAGTGTTTTCATGCAGTGAATCTATAAAACATGGGCTTCCTGCATTTGGTCCCAATATTCAATATTGCATAAATTAGGTATGGTGGTTATATATCTGTAGTCTCAGCACTTGAGAGACCGAGCAGGAGAATCAGAAGTTCATATTTATACTTGGCAATGTAGTGAGTTCAAGGCCAGCCTAGGACACAAAAAACAAAAGACATTCAGTATTTAAAGGTTCTATATGGATCATAGACTTCAGATTAAGTTTACCTTGGATTGTACAAACCTTACATTAAAGTTTGTTTGTTCAGTGTGAACTTTTATTAGGTATAATCTTTAGGAAGATTCTTTGGCCTGCTGCTCATAATTGCCACTCTAAACCATAGAGATTATTGTCAGCACACGCGCGCACACACACACACACACACACACACACACACACACACACATTTCTCATCCACAAGCTAATTGGCAAAGGAATAGAATTCATTAAACCAGTATTGCTTGTGATGGCTAAGCTGATTCAATCTAGCCCTTGTGTTAGATAACCGGAGAAAAGGCACGTCTGGAGCAGTGCTCAGTGTTTGGAAAGAGAGCTTACCACTGGTTGACTTTCTTCCTTTTCTCTTCCTCCCTCTCTTTTAAATTCTCTCACAGCAACAAAAACAAAGGGTTTTTAGGAAGGAGATAAAAGTCAGTAGTCAGAGTCTAGGCTGTTAACACCAGCAATCAGAAGCCAAGGCCAGAGGATTGAGATTTGAGGGCAATTTAGGCTGCATTGACATACCACCACCTCCCCCCAGAATGAGAAGGAGAACGGAAAAGTAGAATCTACATGATAGATTTATGCATGTAAATAATGGTTTTCTACATATAGATGATGTACGAGTTAGGGATATAATGTCTGTCTTGGATTCCTGCAAATTCTTTTTTCAAGAGGAAAACATGTTCCATGATTCTTACATTATATTATATTTTGGTCAGTAGCCAAGGAGAGAGAAGCAGAGATACACGTCTTTTCTTCATTGGTGATATGTTTTCTGGAAGATGCCATTTAAAAGAACCGAGTTGCACCTTCATGTATTAAGTGTTTTGTTAAAAAAAATTTGAGATTTTCTGTTTTTGTTCTCACCAGCATTTTTTCACAATTGTGTTTTAATTATAAATCATAGAGGTGACAGTTAGATATAATTGAAGAAAATTTTAAATGGTTCTTTTTATTAAAAAGACAGCTACAGCTGGAGGGTGGCTCAGCAGTTCAGAGCACTTATTCTTGCAGAGAATCTAACCTTCTCTACCTTTCGTGGACACAAGGTGTACATATTTACATAAAATCTTCCTTTAAAAAAACCTTCATTACTAATTAAATGTTATTGGTTTAAATATTTCTTGCCATCTGCCCTCACTTTGGGCTGTACATGTTTACAAAAATGGTATACATATTTACATGCTGATATACATAAAATAAACCTTTTTTTAAATGACTACTGAATATCAGTAGCCTATATAATCATACTTTTTGCATCATTAGCAATTGTAAGCATTAGTCTTTTTGGCTTAGGAAAGCTTCTAGCTAATAACAGCCAGCCTGGACTGACTGCCACTTCTGTGTGCCCAGCAGTCTTTTTCAGTCCCCTAGCAGAACTACGAAGTAGGTTTTACTGCCCCATTTTACAGATAAGGAAAATGAGAAATGAGAGTTTAGGTAACTTGTCCAAAGTCACAGCTAGTGAGTGGCAGAACCAGGATGTAAGGGCAGATAATTTGGCTCAAGTTTTTTTTCTTAACTTTTTACAGTGTTTCTCATTTTTAGAGAGCTGTGTTAACATTTTTATTTCGTTATTTTGTTTTTTATATAATTTTACTTTAATATTAGAGGAAGGACTAAAAATTCTCACACAGATTTAGCTTTTGAAGAGCAAAGTTATCATTGAGAAAAAAAATAATTATAAGAGCTATCAAACTCAGTGAGCAGCAGAAGCACTACTCCCAAAGGAACAGCAAAGCAGCCTGTTCTGACTCCCATCTGAATGTCAGGGTACCAGACTTCAGAACCAGCAGCAGAGCCAAGTGTAAGGGTCGAACTCCCTCAGAAAAATAAATCTTTACCTTCTAAAAATAACTTCATGTGGCTGGATGAAAACGTTAAGGCAGAGGCAAGCAAGTCTCTGTGAGTTCAAGGCCAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAAGGAAACCTTGTCTCAGAAAACAAAAAACAAAGAAAGAAAGGAATTAGTATTATTGCTGTAAGTTTAACCTTGGTGTTATTGCCCCCTTCCCTAAAAGCTGAGTAGTTGGGAATTCTTCTTTCTCTGTTTATATTTTCTAATGTGACTAAGAACCAGAATCCACCATTGTGGTTGTTCTCCTTGCATTGCGTAGTGTTTGTTTAGAACTCTTTCTGTTGTAG
Seq C2 exon
GCTCGTTACAGGAAGGAGCAAACACTGCTTAAGCAACTGCCTTGCATTCCATTGGTGGAAAACTTGTTGAAGGACGGCACGGATGGCTGTGCGCTGGCTGCCCTCATTCACTTCTACTGCCCTGCTGTTGTCCGACTAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741:ENSRNOT00000060410:5
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(6.3=100)
A:
NA
C2:
PF0030726=CH=FE(29.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]