MmuINT1006012 @ mm10
Intron Retention
Gene
ENSMUSG00000041570 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:MGI Symbol;Acc:MGI:1922434]
Coordinates
chr1:136293280-136297825:-
Coord C1 exon
chr1:136297742-136297825
Coord A exon
chr1:136293422-136297741
Coord C2 exon
chr1:136293280-136293421
Length
4320 bp
Sequences
Splice sites
5' ss Seq
AAGGTATAC
5' ss Score
7.64
3' ss Seq
TAGAACTCTTTCTGTCGTAGGCT
3' ss Score
7.56
Exon sequences
Seq C1 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACCCAGCTGAAGCTCCAGGAGGCCAAAAG
Seq A exon
GTATACACTGCAATATGACATGTATTATGATGATATATCATATATTTTATAGATGCCAGAAATTATCCTAGGAGATACAAAATAAACAATCACTAATGATTAAATTGTACTGAGATTAGAAACTTATGAATTTAGTGTTTAAAGAGTAAAACATAATATTCTGTAGGATACCGTGAGATAGCAGAATTATTAACATTTAGATTCCCTGTCATGTCAGCTACATTGCTGTCGGCTTTATGTTGCTGTTATTGGAGTGAATGTTTTCCCTTCAGAACGCCTATTGCCTTCTTAGAGTCGGTGCATGAATGTCTGAGACTCTAACCTTAGAATCCTTTTACTTTAACAATCGGGTTTATGTTTAAGTGATTCTGAATGGCCTTTCCTTACCTCCTGCCTCTCTGTCTTCCTCCATGCTTCCCCTGAAGTCTCCTTCCAAATGGTTTTGGAAACTGGTTCCAGTAAGTTTTCCTCACTACTTCGATTTTTCTCTCCAGATTGTAATGGTATTGGTGGTATTATCCATAGCTTGCTGCTATCGTCATTTCATATTGATCTGTTTGTCATTAAGTAGAGGGATCAGGTTTTTGTTTGTTTGTTTTGTTTGTTTGTGACAGGGTTTCTCTGTGTAGCCCTGGCTGTCCTGGAACTCACTATAGACCAGGCTGGCCTCGAACTCAGAAATCTGCCTGCCTCTGCCTCCCAAGTGCTGGGGTTAAAGACGTGCGGCACCATGCCCAGCAAATGATCGGTTTTTAAGATATGTTCATAATATAAAATAAAAAATAATGGGTCAAGTCAGTTTTAAGGACATTTTAAAGAATAAGCACATTTGCTCATCACAACATTCACAGACCATTATTACTAATGCAAGTATGGATACAAAATCTTGCTACTAGTAAAGACTTTTCATAAAAGTGAATTTGAATAATCTTGTAAGTTGCCTGAATGTTTAAATTATTTTTGGCAAAACAATTTTCTTATTATCCTATATAAAAACAACACTTTACTATTTGATAAAAATTAAAAGCTTATCTGTGTCCTCACCAGTATTGCACTTACACTGTATAAAACTCTTGAGTTGACCTATGATTGTTATTTCAAGGTTAAGTGTGAGCAGTTAAAGTATTTTAAGACCTCTTAGGCACCGTCCTGATAAAAACATACAGCCTAGTGAGCTAGAGAGTTAGCTCAGCAGGTAAGAGTACTGGCTACTCTATAGGGATATGGGTTCAATTCCCAGCACTTACCGAGCAGCTGACAATCAATCCATAGCTCTTGTCCCAGGGGATCCGATGGCCTCTACTGACATCTGCAGGCACCAGGCATGCGAGTGGTTCGCCACTTGTATATATATAACATGCATATATATGAACATACACACATGTATATTATATGTTATATTTAATTATATTATATGTAATTAAATTATATATACCTATATAATGTTAAAAATCACCATTTTTAACCATTGATTTAAAATATGGTTAAATCCCTTTGAATGCCAGATTTTTAAGTTTGTAAAAAGACTATGAAATATTTTTGTGCAGTGAATTTATAAAACATGGGCTTCCTGAGTTTGGTCCCAGCACCTAATATTGCATAAATCAGGTATAGTGGCAATATATCTGTAGTCTCAGCACTTGGGAGACAGAAGCAGGAGAATCAGAAGTTCACAATCGCCAGGCAGCGGTGGCGCACGCCTTTAGTCCCAGCACTCGGGAGGCAGAGGCAGGCGGATTTCTGAATTCAAGGCTAGCCTGGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCAAAAAAAAACAAAAAAAAAAAAGAAGTTCACAATCATCCTTGACTATGTAGTGAGTTCAAGGCCAGCCTGAGATGCAATACAAAACACAAGGCATATTCAGTATTTAAAGGTTCCATGTAACTCATGGAGTGCAGATAAACTTACCTTGGAATTGTACAAACCTCACATTAAAGTTTGTTTGCTCAGTGTGGATTTTTATTGGGTGTAATCTGTAGGAAATGCTTTGGCCTGCCATATACAATTGCCACTCCAATAGGGCTTTATTGTCAGCACGTGCACACACACACTTCTCATCCATACATGCTAATTGGCAGAGGGAATAGAATACATCAAACCAGTTTTGCTTGCGGTGCTAAGTTGGTTCACTATGGCCGTCGTGCTAGATAACTGGAGAAAAAGAAGGCAGGTCTGGAGCAGTGCTCGCTGTCTGGAAAGGGACTTGCCACTGGCTGGTTTTCTTTCTTCCTTTCCTTCTCTCCTCTCTCTTTTGAATGGTGTCACAGCAACAAGGAAGGGTTTGAGGGATGATATAAAAGTCAGTAGTCAAGGAGTCTAGGCTAGGCTATGCAAGGTCTCCGGCTGTACCATCAGTGTTTGGAAGCCAAGGCTAGGAGACTGAGCTTGAAGGGCAGTTTAGGCTGCATAGACGTCATACCATCGCCCCAGAATGGGGAGGAGAACGGAAAAGTGGATCTGTGTGAGAGATTTGCACATGTAAATAATTGTTTTCTGAATATAGATGATGTATGAGTTAGGGATATAATGTCTGCCTTGCACTCCTCCAGCTTTTTTTTTTTTTTCCCAAGAGGAAAACATGCTCCACGGTTCTTGCCAGTCAGCAGCTAGGGAGAAAGAAGCAGAAATATGTGCCTTTTCTTCATTGATGATATGTTTTCTGGAGTATGCCATTTAAAAGAATCGAGTTGCATCTTCATGTGTTAAGTGTTTTGTTCAATAAATTTGAAATTTTCTGGTTTTGTTCCCACAAGCCCTACAGCTGGCGGGTGGCTCAGCAGTTCAGAGCACTAGCTACTCTTGCAGAGGAACCACGCTCTGTTCCCTGAACCCACGGTGGCTCAGAACCCTCTGTGACTCAGGTTCAGAGCATCTGACCCTCTCTAGCTTTCATGGATACAGGCACACATATGGTGTATATATTTACATGGCGCTATATATAAAATAAACCTTTTTGTAAATGACTACTAAATATCAGTAGCCTATGTAAAAAAAGTTCATACTTTTTGTTAATATAAGGTTTTATGTAGTATTAGTAAAGTGTAAGCATTACTCTTTGGCTTTAGGAAAGCTTCTAGTTAATAACGGCCAGCATGTACTGATTGCTTCTGTGTGCCCAGGAGCGTACATAGCACTGTGTGTCTGTCTTTTTAAGTCCCCCAGCAGTACTGCAAAGTAGGTTTTACTGCCCCCATTTTACAGATAAGGAAAATGACAAGTGAGTGTTTAGGTAACTTGTCCAAAGTCAGAGCTAGTAAGTGGCAGTACCAGGATGCAAATGCAAGTAATATGGCTCAAGAGATTTTCTCTTCACTTTTTACAGCATTTTATAGATCTCATTTTTAGAGATCTGTGTTAACATTTTTATTTTATTATTTTGTTTTTTTATATACAAGATTTCCCTGTGTAGCCTTGGCTGTCCTGGAATTCACTCTGTAGAGCAGGCTGGCCTTGAACTCACAGACATCTGCCTGCCCTGCCTTAACATTTTTATTGAGCCACATAAAGTTATTTTTAGAAAGCAAAGATTTATTTTTCTAAGGGAGCCCAACCCTGCCACTTGGCTCTGTCACTGGTTCTGAGGCCTGGTGCCCTGGACATTCAGATGCCAGTCAGAACAGACTGCCTTGGGGTTCCTTTGTAAATAGTACTTTTTGCCACTCACCAATTTTGATAGCTCTTATAGTAATTATTTTTTTCTCAAATGATACCTCTGCTCCTCAAAAGCTTCAAAAGCTTAATAAGTCTTTGAGAACTTTTAGATTTTCCTCTAATATTGAGTAAATGAAAATCTAATCAGTAAATGAACAGAACTGATTTAAATGCAAAGTGTTCAGATCTGTTTTGTGGTAGTGTAACTATTGTAAAGTAAATGCCATGTGATATTATTGCTAAAATGTTATCTTAAGTTTATAGATTTGAAATTACTAGACTTTAATCCCAGAACTCAGGAGGCAGGGGTAGGTGGATTTCTGAGTTTGAGGCCAGCCTTGTCTACAGAGTGAGTTCCAGGACAGCCAGGGCTACACAGAGAAACCCTGTCAAAAAAAACCAAAAACAGAGAAAGAAATTAGTGTTATTGCTGTAAATTTAACCTTGGTAATATATAGTATTGTTGCCCTCTCCCCACAAAAAAAGCTGTGTAGTTGGGAATTCTTCCTTCTCCTGTTTATATTTTCTAACGTGACTAAGAACTAGAATCTATAGTTCTGGTTTTGTCTGCTTGTTTTCCTTGAATTGTGTAGGATTTATTTAGAACTCTTTCTGTCGTAG
Seq C2 exon
GCTCGTTACAGGAAGGAACAAACACTGCTTAAGCAACTGCCTTGCATTCCATTGGTGGAAAACTTGTTGAAGGATGGGACCGACGGCTGCGCACTAGCTGCCCTCATTCACTTCTACTGCCCTGCTGTTGTCCGGCTAGAGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041570:ENSMUST00000192001:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.652 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(16.5=100)
A:
NA
C2:
PF0030726=CH=FE(28.7=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types