RnoINT0028786 @ rn6
Intron Retention
Gene
ENSRNOG00000008741 | Camsap2
Description
calmodulin regulated spectrin-associated protein family, member 2 [Source:RGD Symbol;Acc:1310950]
Coordinates
chr13:53179139-53179800:-
Coord C1 exon
chr13:53179717-53179800
Coord A exon
chr13:53179172-53179716
Coord C2 exon
chr13:53179139-53179171
Length
545 bp
Sequences
Splice sites
5' ss Seq
AAGGTACAG
5' ss Score
8.04
3' ss Seq
CCGCCATGCTTCCTCTGAAGTCT
3' ss Score
4.32
Exon sequences
Seq C1 exon
GTAAATGAACACTTGAAAGACATAATGGAACAAGAACAAAAATCTAAAGAGCACCACACGGCTGAAGCTCCAGGAGGTCAAAAG
Seq A exon
GTACAGTCTGCAATATGACATGAGATTCATTCATACATTTAGAGATGCCAGAAGTCATTCTATGATATACAAAATAAATACTCACTGATAACTCAGTTGTACTGAGATAGAAACTTAAGGATTTAGTGTTTAAAATAAAAAATAATACTCTGTAGGACTCCCTGAGGTAGCAGAATTATTAACATTTAGATTCCCAGTCCTTTCAGCTACATTGCTATTTGCTTAAGTGATTCTGAATATCTGAAATAAAATTATTTGTTGCTAAAATATCTTTAGTATCCTAAAATATGATTCTGTATAGGGGGAGCAGGAGAGAGGAGGAAATGGCACTGGTCTTGGATATTAGGAACTTACATAGTTTTAACTAAAGTGTTAATTAGCATAAAGCCCTGTGGGAGCTATGAATGGGAGTCCAGCTGGTGGGAGCCTGCTGTAGCATGCTGCTGGTGATTCTGGTGGGAGCCTGCTGTAACATCACGTGGTTGATTCTGATGGCCTTTCCTTTGCCTCCTACTTCCCTGTTTTCCGCCATGCTTCCTCTGAAG
Seq C2 exon
TCTCCTTCCAAATGGTTTTGGAAACTGGTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000008741:ENSRNOT00000060410:4
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.571 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0030726=CH=FE(17.1=100)
A:
NA
C2:
PF0030726=CH=FE(6.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg19)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]