MmuINT0028847 @ mm9
Intron Retention
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:127137317-127137789:+
Coord C1 exon
chr8:127137317-127137381
Coord A exon
chr8:127137382-127137720
Coord C2 exon
chr8:127137721-127137789
Length
339 bp
Sequences
Splice sites
5' ss Seq
GATGTATCC
5' ss Score
1.64
3' ss Seq
CCCTTAGCTCATGTGGTCAGACC
3' ss Score
1.49
Exon sequences
Seq C1 exon
AAACAGCCCTCAAGTTCAAGAGGCTGAGCCTGCTGTCCTGCAGAAACATCATCTCTCTGATGGAT
Seq A exon
GTATCCTTCTCAGCAGGTGCACGGTCCCTCTCCTCTGCCCTGCAGATCAAAGAGGGAGGCTTTGTCAACCTAACTAGGGTTGGGTCAGGATCCACAGAGCCAGAACAATGCAGTAGAGAGAGGGGGATCGCCCCGAAGGGAATGATGGGTCTGTAAATATTCAGGTGCCTGCCCCATCTCACCTTCCTTTTGCCCTCCTTGGAAGTTCCTGTCTCCAGGTTACTCTCCCAGGGCCCCAAATCTTTACTCGTGCCACACAGCCCTGGTCTCCTACTATGATCCCAGAGTTGGGTTCCCACAAGGCTCCCGAGTTGAAAGTCCCTTAGCTCATGTGGTCAG
Seq C2 exon
ACCAGTGGCAACGGGAAGCTGGAGTTTGAAGAGTTCCGGGTCTTCTGGGACAAGCTGAAACACTGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-Capn9:NM_023709:15
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=FE(34.4=100)
A:
NA
C2:
PF138331=EF-hand_8=PD(29.5=78.3),PF134051=EF-hand_6=PU(5.7=8.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: