MmuINT0028848 @ mm9
Intron Retention
Gene
ENSMUSG00000031981 | Capn9
Description
calpain 9 [Source:MGI Symbol;Acc:MGI:1920897]
Coordinates
chr8:127137721-127138526:+
Coord C1 exon
chr8:127137721-127137789
Coord A exon
chr8:127137790-127138447
Coord C2 exon
chr8:127138448-127138526
Length
658 bp
Sequences
Splice sites
5' ss Seq
ATGGTATGT
5' ss Score
8.35
3' ss Seq
GCTCTACTCCCTGGTCCCAGGAC
3' ss Score
6.77
Exon sequences
Seq C1 exon
ACCAGTGGCAACGGGAAGCTGGAGTTTGAAGAGTTCCGGGTCTTCTGGGACAAGCTGAAACACTGGATG
Seq A exon
GTATGTGGTCTGGCTTAGACGCCCAACAGAGCCAAGCAAAGACCTAGGCTACAGGCTAAGAGTGCTGTTGGGAGGGAGTCAAGGAACCACAGAGCATCCTGATGCAGGCAGAGATACCACGGTGCTTCCAGCCAGAAGGGAAGGAGACAGAAGAGGACCCGTGGCTGGAAGTAGAGCAACAGTGTGAGACCCAAACTCCTCAGCAACACATGGAAGAAAAGAGGGCTGGCCTACAGGCTGGGGGTGTGGCTAAGTTGGTAGTGTGCTTGCATAGCATACATGAAACCTTGGGTCTGATTCTCATCAGGAAGCTAGGCGTGGTGGAACACACTCAAGGACCAAGGATCTATTAAGGTCACCTTCTGCTACATAGAGAGTTGGAGGCTAAACTGGGCTACATGAAAGACCCTGTTGGAGAGGGAGGGAAAAAGGAAGGGAGGGAGGGAGGGAGGGAGGGAAGAGGGAGGGAGGGAGGGAGGGAGGGAGGGAGGGACGGGGGAGGGTGGGAGGGAGGAAGGAAAAAGAAGAGGAAAGGAAGGAAAGAGAAAGTCTGGGTCCAACCTTGTCTGTCTAGAAGGCAGCTGTCACCCCTGGGCAGCTGCCAGCTGCCACTGGTCCCTGGGCTCTGACTTCTCCATGCTCTACTCCCTGGTCCCAG
Seq C2 exon
GACCTGTTTCTCCAGTTCGATGTGGACAAGTCTGGCACCATGTCTTCCTATGAGCTGCGGACGGCACTGAAAGCTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000031981-Capn9:NM_023709:16
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF138331=EF-hand_8=PD(29.5=78.3),PF134051=EF-hand_6=PU(5.7=8.7)
A:
NA
C2:
PF134051=EF-hand_6=FE(74.3=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: