MmuINT0034567 @ mm10
Intron Retention
Gene
ENSMUSG00000057110 | Cntrl
Description
centriolin [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35176128-35178110:+
Coord C1 exon
chr2:35176128-35176322
Coord A exon
chr2:35176323-35178038
Coord C2 exon
chr2:35178039-35178110
Length
1716 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATGAGTTCCCTTCTTTTCAGAGC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GCTCAACTTCGACACTGTATGTCTAAGCAAGCAGAAGTATTGATCAAAGGAAAGCAGCAGACAGAGGGCACCCTACACAGTCTGAGGAGACAAGTTGATGCTTTAGGAGAACTGGTCACTAGTACCTCCACAGACTCAGCATCATCACCCAGTCTGCCTTCCCTTGTGGAGGACTCCCAGCATGGGCATAGTCAG
Seq A exon
GTAAGAGGAAGCTCTCTAGAGTTACTTGGAAACTTCGGGGTAGGTGGTCCAGAAAGACTGAAATGCCACCCTCAACTGTCTTAGCAAAGACTATTTGTCTGCCATCGCTGGGGAAAGCTTATAGGTGCAGAAAGAATAGGCAAGCTGTAGCTTAGACGGTGAATTGGAATTGGAGCTAGGATGACTCAGGAGAGATTTAGTGTGTGTCCTCAACTTCTGGATTTATTTTCAGTATAGAGGGTTGGAGAGATGGTTCAGCAGTTAAGAGCACTGAAGCTTTACCCAGACTAAGTTCCTAGCACTCATCTGGCAGCTCTCACATTCATGTGTTTGATTTCAAAGGACCCGTCACCCTTTTCTCCACAAGCACCAGGCACCCCAACAGTGCAGACATATACATGCAGGCAAAACAGCCATATACATTTAGAAGGAGTAAGAGCTTAGGCCTGTGAGGTTAAATGTGGGTTTCCCTGGGTTTTAGGTGGTACCTCTCATGTCTCAAAGACATTTGAATGCAGACTTCACTTCCTATTTATAAAACTCTGGACATCACAAAGGTTTCTGTGTGGGACTTAGTTATCAGTCATCTAATAGAAAAAAAAATAACTCGTGGAACTGACCAACAGTAACACATTGTGAGCAGAAAATGGCTTCCATTTTCAGGTGCTTACTCTATGTACATACTAAAAACCATACATACAACACCCCATTTAGAAAGGTACAAATTGTCCCTTTGTGTAGGTAAGGAACTACATGAAGTTGTAAGTAACAGGTCAAGGGTATAGCAAAGGACAGACAGATCAGGATACAGAAGCCAACCTACCTTTACCAAGAAGCAGCGGATCCTGAGTATACTGTAAATCACAAGGACTAGCCAAGGACAGTTTTGTAGTGAGAATTTTAGTTTCTTTAAATACAGAAATGTTACATGAATATGGTTTTGTTTTGATCTCAGGTATGGGATACGGAGCTGCTCTCATGCTTTTGTGGGGGGTGTGATTTTGCCAGCTGCCAGTAGTTTCCACAAGTGTATGATGTTTGGAATTCTGGGGACTCTTGAAAGGGTATATAAGTGCTAGAGCCCCGAAGGGCATCGCTCCCGCTGGTTAGCCAGTTGGTAGTTAGTTGTTGGTTAAGTGGTCAAGTGTAGAAAATCATGAGATATCCTGACTGCAAAGATCAAACTTGCCCCAGGGAACTCAACATCCCTAAACAGCAGAAAGTAGTCTAATAATATCCACCGCCTCCCCTCCCCTCCCCTCTAGTCTTTCTCTCCTGCCTAGTGTTGGGAGATTGAAAGGGTGGAAGAAGAGGAGTGGGAAAAGGTGGTAGAAAAAGGAACTCAGCCTACAGCCAAGTTTCGATGGATACACAGTTGTTTCTTTGACTGGCCTGAGGGGCAGATAGCTAACCTGAGACACAAACCTAATGAGCAGCGGGGCTAAGATTTTAATATGGTTATCTTACCACCTGTGGTTGAGACAAGTCAGGTAAAGGCCCAGACCATATGGCCCTCCAGAGCTTAGACTGTAAGGCAATAGCACAGGGCCCATACATGAGCCTTGGGGGTACTCTACAAGATATCAGAGGCATAGGTGAATTGTAGGCAGTGTTTTAGTCTGTGGTTGTCATCTGAGCCACAGTGGCATGAAGCCTTAAATAGGGTTGGGATTGGGGGCTGGATTCTGTGCCTAAAATGAGTTCCCTTCTTTTCAG
Seq C2 exon
AGCTCCTTCCAAGTTCTGCAAGTTCCATTAGAAGAACCAAACAGTTACCGCCACTAAGTTTCCTGCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110:ENSMUST00000156933:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAACTTCGACACTGTATG
R:
AAGCAGGAAACTTAGTGGCGG
Band lengths:
263-1979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types