MmuINT0034567 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35031648-35033630:+
Coord C1 exon
chr2:35031648-35031842
Coord A exon
chr2:35031843-35033558
Coord C2 exon
chr2:35033559-35033630
Length
1716 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATGAGTTCCCTTCTTTTCAGAGC
3' ss Score
8.48
Exon sequences
Seq C1 exon
GCTCAACTTCGACACTGTATGTCTAAGCAAGCAGAAGTATTGATCAAAGGAAAGCAGCAGACAGAGGGCACCCTACACAGTCTGAGGAGACAAGTTGATGCTTTAGGAGAACTGGTCACTAGTACCTCCACAGACTCAGCATCATCACCCAGTCTGCCTTCCCTTGTGGAGGACTCCCAGCATGGGCATAGTCAG
Seq A exon
GTAAGAGGAAGCTCTCTAGAGTTACTTGGAAACTTCGGGGTAGGTGGTCCAGAAAGACTGAAATGCCACCCTCAACTGTCTTAGCAAAGACTATTTGTCTGCCATCGCTGGGGAAAGCTTATAGGTGCAGAAAGAATAGGCAAGCTGTAGCTTAGACGGTGAATTGGAATTGGAGCTAGGATGACTCAGGAGAGATTTAGTGTGTGTCCTCAACTTCTGGATTTATTTTCAGTATAGAGGGTTGGAGAGATGGTTCAGCAGTTAAGAGCACTGAAGCTTTACCCAGACTAAGTTCCTAGCACTCATCTGGCAGCTCTCACATTCATGTGTTTGATTTCAAAGGACCCGTCACCCTTTTCTCCACAAGCACCAGGCACCCCAACAGTGCAGACATATACATGCAGGCAAAACAGCCATATACATTTAGAAGGAGTAAGAGCTTAGGCCTGTGAGGTTAAATGTGGGTTTCCCTGGGTTTTAGGTGGTACCTCTCATGTCTCAAAGACATTTGAATGCAGACTTCACTTCCTATTTATAAAACTCTGGACATCACAAAGGTTTCTGTGTGGGACTTAGTTATCAGTCATCTAATAGAAAAAAAAATAACTCGTGGAACTGACCAACAGTAACACATTGTGAGCAGAAAATGGCTTCCATTTTCAGGTGCTTACTCTATGTACATACTAAAAACCATACATACAACACCCCATTTAGAAAGGTACAAATTGTCCCTTTGTGTAGGTAAGGAACTACATGAAGTTGTAAGTAACAGGTCAAGGGTATAGCAAAGGACAGACAGATCAGGATACAGAAGCCAACCTACCTTTACCAAGAAGCAGCGGATCCTGAGTATACTGTAAATCACAAGGACTAGCCAAGGACAGTTTTGTAGTGAGAATTTTAGTTTCTTTAAATACAGAAATGTTACATGAATATGGTTTTGTTTTGATCTCAGGTATGGGATACGGAGCTGCTCTCATGCTTTTGTGGGGGGTGTGATTTTGCCAGCTGCCAGTAGTTTCCACAAGTGTATGATGTTTGGAATTCTGGGGACTCTTGAAAGGGTATATAAGTGCTAGAGCCCCGAAGGGCATCGCTCCCGCTGGTTAGCCAGTTGGTAGTTAGTTGTTGGTTAAGTGGTCAAGTGTAGAAAATCATGAGATATCCTGACTGCAAAGATCAAACTTGCCCCAGGGAACTCAACATCCCTAAACAGCAGAAAGTAGTCTAATAATATCCACCGCCTCCCCTCCCCTCCCCTCTAGTCTTTCTCTCCTGCCTAGTGTTGGGAGATTGAAAGGGTGGAAGAAGAGGAGTGGGAAAAGGTGGTAGAAAAAGGAACTCAGCCTACAGCCAAGTTTCGATGGATACACAGTTGTTTCTTTGACTGGCCTGAGGGGCAGATAGCTAACCTGAGACACAAACCTAATGAGCAGCGGGGCTAAGATTTTAATATGGTTATCTTACCACCTGTGGTTGAGACAAGTCAGGTAAAGGCCCAGACCATATGGCCCTCCAGAGCTTAGACTGTAAGGCAATAGCACAGGGCCCATACATGAGCCTTGGGGGTACTCTACAAGATATCAGAGGCATAGGTGAATTGTAGGCAGTGTTTTAGTCTGTGGTTGTCATCTGAGCCACAGTGGCATGAAGCCTTAAATAGGGTTGGGATTGGGGGCTGGATTCTGTGCCTAAAATGAGTTCCCTTCTTTTCAG
Seq C2 exon
AGCTCCTTCCAAGTTCTGCAAGTTCCATTAGAAGAACCAAACAGTTACCGCCACTAAGTTTCCTGCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:42
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.732 A=NA C2=0.889
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAACTTCGACACTGTATG
R:
AAGCAGGAAACTTAGTGGCGG
Band lengths:
263-1979
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: