RnoINT0038585 @ rn6
Intron Retention
Gene
ENSRNOG00000022015 | Cntrl
Description
centriolin [Source:RGD Symbol;Acc:1305317]
Coordinates
chr3:14368992-14370990:+
Coord C1 exon
chr3:14368992-14369198
Coord A exon
chr3:14369199-14370936
Coord C2 exon
chr3:14370937-14370990
Length
1738 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
3' ss Seq
ATCAGTTCCCTTCTTTTCAGAGC
3' ss Score
8.46
Exon sequences
Seq C1 exon
GCTCAGCTTCGAGACTCTATGTCTAAGCAAGCAGAAGTATTGATCAAAGGAAAGCGGCAGACAGAGGGCACCTTACACAGTCTGAGGAGACAAGTCGATGCTTTAGGAGAACTGGTCACTAGTACCTCCGTGGACTCAGCACCATCACCCAGTCTGTCTCATCTAGAGTCTTCCCTTGTAGAGGACTCCCAACATGGACATAGTCAG
Seq A exon
GTAAGAGGAAGCTCTTGAGTCTAGAGTCACCTGGAATATTTGAAAACTTTGGGGTAGGTGGTCCAAGAAGACTTGGGATTGAAATGCCACCCTCAGCTGTTTTAGCAAAAACCTATGTGACTGCCATCTCTGGAGAAAGTTTACCTGGTTTATAGGTACAAAAACGATTGGTTAAGCCGGTAGCTTAGATGGTGAACTAGAATTGGAGATAGGATGACCCAGGAGAGATTTGTGTCCTCGACCTCTAGATTTCTTTCTTTCATCTATTTATTTCTACTTGTTGATCAGTAGAGCGCAGACCTTCGGGGTTGGAGAGCTGGCTCAGCAGTAAGAGCGCTGGAACTTGTCCCAGATGAAGTTCCTAGCACTCGCATGGCAGCTCACAGCCATGTCTGCTTGCCAAGGACCCATCACCTTTCCTGCACAAGCACAGGCACCTCAACAGTGCAGACGTGCACGCAGGCAAGACAGCCATACACGTTCAAAACATCTTAGACCTGGGAGGTTAATCTCTCAAAGAGAGTTCAGATTTCATTTCCTGTCTGTAAAACTCTGGATCTCAAAGGTTTCCTGTGTGGGACTTAGTTACCAATCAGTTAATAGGAACAAAAAGTAACCCGTGGAACTGGTCAACAGTAACGCATAATTATGAGCAGAAAATGGCTTCCATATTCCGGTGCTTATTCTATGTACATCCTAAACACTATACATACAACACCCCATCTAGAAAGCTACACATTGTCCCTTTATATAGGTAAGGAACTACAAAAAGTTGTAAATAACAGGTCAAGAGTATGGCAAAGGCCCAATCAGGATATAGCAGCCAGCCTACCTTTACCAGAAAGCAGCGTATCCTGAGTAGACTGTAAATCACAAGGAGTATCCAAGGACAGTTTGTAGTGAGAATTTCTTTAAATACAGGAATGTTAATTACAGATCCCCGGTGTGGGCTATGGGGTGACTTTAGATCACCCACAGCGCTGACTGAGTTACCTCATGCTCCAACAGGGGGTGAGCCTGCCAGCTGCTGACTGTTTCCACAAGTGTATGACACTTGGAATTCTGGGGACTCTTGAACGGGTATTTAATGCTAGAGCCCCAGGGGGGATGGCAGTTGCTCCTGCTGCTGAACCAGTTGGTGGTTGGCTGCTCTTGGTTAAGTGGTTGTGTGTTAAAAAGAAAAAGAAAAAAAAAATCGAGAAGAAACGAGATTTCCTGACTGCAAAAATCAAACTTGCGCCAGGGAACTCAATACCCCTAATCAGCAAAAAGTAGTCTAATGATCTCAACCCCCTCTCCATCCTTCCTCTCCTGCCTCGTGTTGGGAGACTGGAAGGGTGGAAGAGGAGTGGAGGTGGTAGAAAAAGAGACTCACTAGTAGCCAAGTTTGGATGGAGACACAGTCACCTCCTTGATTGGCCTGAGGAGCAAATGGCTCGCCTAAGGCACACACCTAATGGGCAGCAGCGCTAATCCGGGTGCTTACCTTAACACCAGTGGTTGAGACAAGTCAGGTAAAGGCCCAGATTGCATTGCCCACCAGAGCTTAAGACTGTAAGGCAATGGGTACAGAAACACACATGGGCCTTGGAGGTGCTCTACAAGATAACGGGGGCACAGGAGCATTGTAGGCAATTCAGTCTGGGGTTGTCATCTGGGCCACTGTGACAATCCCACTTTGAATTGGGTTGGGATTGGGGCTGGCTTCTGTGGCTAAAATCAGTTCCCTTCTTTTCAG
Seq C2 exon
AGCTCCTTCCAAGTTCTGCAGGTTCCATCAGAACCAAACATTTACCGCCACTGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000022015:ENSRNOT00000007776:41
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.783 A=NA C2=0.824
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCAGCTTCGAGACTCTATGT
R:
TCAGTGGCGGTAAATGTTTGGT
Band lengths:
261-1999
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]