BtaINT0040498 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011417 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr8:112497693-112498495:+
Coord C1 exon
chr8:112497693-112497779
Coord A exon
chr8:112497780-112498053
Coord C2 exon
chr8:112498054-112498495
Length
274 bp
Sequences
Splice sites
5' ss Seq
AGGGTACAT
5' ss Score
3.77
3' ss Seq
CCTTTCTCATCCTGTTGTAGGAT
3' ss Score
11.3
Exon sequences
Seq C1 exon
AGCTCCTTCCATCAAGTTCCACAAGGTCCATCACCATCAGCAGGCAGTTACCGACACTGATGCTGTCCTCAGCTTCCTGCTCACAGG
Seq A exon
GTACATGTTACAAAAAGTTCTTTTATTTATAAATAACTAGCACTTTCAATTGGCAGATGTTGAGTTGTAGCTTATCATAGTCTTAATCAAAGTAACCATCTAACTTTTATCCTGGGTAATTTTGTATGGTGGTTCATCTTAAAACATTTTTCCAAAGAAGTACTCAAATATTACCTGTTAGCCATGATGCTATCATCTAGTTCTGTGAATTTAGCTAAAACCTGTTTTTACTGTTGCAGAAATTCACCCTTAGTCCTTTCTCATCCTGTTGTAG
Seq C2 exon
GATGAGTGGCTCAGCCAGATGGAGGAAGACTGTCTTGCCTAAATATGAGGAAATAACTTTCTCCACTACCTCACTAACTTCATTAGAATGCCACTTGGTTTTTATCAAGATCCAGTCAATTCAGATGCTGAAAACTCCACTGTAGCTTATTCCACTTCTACAGCGACTCTCAGCATTTTTGTTAAGTCACCTGTACATATGGGAATATCGTATACTATTTAAACCAGGGTCTTACATGGCTGAGGGTTTTCTTTTTTTAACCTTTGAAATGCATTATTATAAAACCAGTGCTGATCTGAATCTATAAACTGGTAAAATCTATAGTTAGGTTAAAAACAACATGCTTAGGCTCCTCTTTATTTATAGTGCCAAAAGTTATTTTTGGATTTTGTTTAAAATCTATTTTCATATGAAAATAAAAGATAAAATAAATGTGGGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011417:ENSBTAT00000061592:42
Average complexity
IR
Mappability confidence:
NA
Protein Impact
3' UTR
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=NA
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATCACCATCAGCAGGCAGTT
R:
TCAGCCATGTAAGACCCTGGT
Band lengths:
302-576
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]