MmuINT0034568 @ mm9
Intron Retention
Gene
ENSMUSG00000057110 | Cep110
Description
centrosomal protein 110 [Source:MGI Symbol;Acc:MGI:1889576]
Coordinates
chr2:35033559-35034342:+
Coord C1 exon
chr2:35033559-35033630
Coord A exon
chr2:35033631-35033916
Coord C2 exon
chr2:35033917-35034342
Length
286 bp
Sequences
Splice sites
5' ss Seq
CAGGTACGT
5' ss Score
10.65
3' ss Seq
TTCTGCTTGTCTTACTGTAGGAA
3' ss Score
9.54
Exon sequences
Seq C1 exon
AGCTCCTTCCAAGTTCTGCAAGTTCCATTAGAAGAACCAAACAGTTACCGCCACTAAGTTTCCTGCTTGCAG
Seq A exon
GTACGTTAGCCAACCAGCACTTAATTAAAACATGGAATTCTGGCAGCCCCAGGAAAACTAACCTCATCTTTCATCATTTTATAGCAGTTCATCTTAAAGCATTTGGGGGCTGGAGCTATCTATGGCTTGATGGTAGAGCACTTGCCTAGCACATGTACGTCCCCAGATTCAATCCCCAGCAGGTCCTTAAGCACATTATTTTGCCAGTCATCACACCACCACCACATCCTGTAAGGCCTTGTCTGGTTAGAGGTTTAACTCATCCGTTCTGCTTGTCTTACTGTAG
Seq C2 exon
GAAAAGAAGCTCCAGCCAAGGTCAGGAATACAGCCATGTGTAACCATAAGAGGAAATAGCTACTCTCCTACCTCACTGACATCCTAATGGAATGTCAATCAAGATCCTGTGAAGACTGAAAATGCATTGTAGTTTGTACCATTTATACCGAGGTGTCTGTAAATCACATGCACTTGTGGGACTAGATGTGTGTATCTAACATAGGATGTAAGGGGCTATTTTTGACTCTCCTCCTCCTCCAATGATGAAATATTTTTTAAAGACAGTGAAACCACATATACTGAGTCCATAACTGGTATGTCTAGTTACCATGGAAAAGAATGTACTAAAAGCCCCTAGGCTTAATTAATAAGTTATTATTTTTGATTCTGATCCAAAGTTTATTTTTAATATGAAAATAAAGGTACAGTCAACTTGTGTCTGTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000057110-Cep110:NM_012018:43
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.889 A=NA C2=0.964
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTCCAAGTTCTGCAAGT
R:
GGAGGAGAGTCAAAAATAGCCCC
Band lengths:
305-591
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: