HsaINT0033520 @ hg38
Intron Retention
Gene
ENSG00000119397 | CNTRL
Description
centriolin [Source:HGNC Symbol;Acc:HGNC:1858]
Coordinates
chr9:121175018-121177610:+
Coord C1 exon
chr9:121175018-121175224
Coord A exon
chr9:121175225-121177162
Coord C2 exon
chr9:121177163-121177610
Length
1938 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
3' ss Seq
TTCCTTTTGTCTTACTGTAGGAA
3' ss Score
10.42
Exon sequences
Seq C1 exon
GCCCAACTCCGACACTGTATGTCCAAGCAAGCAGAAGTATTAATTAAAGGAAAGCGGCAGACAGAGGGCACTTTACACAGTTTGAGGAGACAAGTAGATGCTTTAGGGGAATTGGTCACCAGCACCTCTGCAGATTCAGCGTCATCACCCAGTCTGTCTCAGCTGGAGTCTTCCCTCACAGAGGACTCTCAACTTGGACAAAATCAG
Seq A exon
GTAAGCAGCAGCTCTTTTTAAAAACAAAACAATAGCCTGAGGTTGTTTTTTGTCTTTTTTGAGACAAGGTCTTGCCCTACCGCCCAGGCTGGAGTGCATTGGTACCATCACAGCTCACTGCAGCCTTGACCTCCCAGGCTCAAGTGATCCTCCCACCTCAGCCTCCCATGTAGCTGGGACTACAGGCACACACCACTTGGCTTGGCCACTTTTTAAAATTTTTTGTAGAGATGGAGGTCTTGCTGGGTTGCCAGGGCTGGTCTCAAACTCCTGGGCTCAAGCGATCCTCCTGCCTCGGCCTCCCAAAATGCTGGGATTACAGGCGTGAGCCACCACGCTGAGCCAAGAGGAAACTCGTAAGATAGGATTTAATATATTACATAGAAAGTACTTAAAAGCCGTGGGGTGTATAATCTAGAGGAGATTCAGAAAAATATAGATTATGCCGCCTTCAACTCTCTGAAAAACTTGTCTTAGCAAAGACTTGGTAGAGGTAGATAAGCTGATGGCTTAGGAAACAGACTACGACTGCAGATTGGATGACCTGGCAGGGATATAGTTAATTCTACTATTCATGTCCTCCACTTCTGGATTTATTTATTTCCTACTCTGTCAATATAAAGAGCTTAGACCTGTGAGGCCAATATGAGTCCTAGTTTAGTATGTCTCCCTGCATTTTGTAACTTACATTTACAGAGTTGGAATTCAGACCTCTTAACCTAAGGTCTATAAAAACCCTGAATTTCACAAAGGTTTTCTGTGTGAGCTTAGATAAGGTTAATAAGCATTTAAGAGGAACATGAAATATACTCATGGAACTGGTAAGTAGTAGCACACACAACTGTCAGAGATAGGTAACAGCTTCCATTTTCCAGTGCCTATTGTGTGCACATACAAAACTTTATATATATCATCTAATTTTTACATCCTTGGAGGTAGGACTTATCCTTTTATATAGATAAGGAATCTGTACAAAATGATAAATGATTTGGTCAAGGACATAGCAAAGGACAACAGCAGGACTTGCGGGCTAATCTATCTTTACCACAGAGCAGTATATTTTAATGGTGGAGCCACAAGGAGCTTTCAAGGACAGTTGCCTCTTTAATGTGCCCAAGGTGGGCAAGTGACTTACCTAGTTCACACAGCTAATTAGCAGCAGGGCCATTAGCAGCAGGGCCATCTGAATATGATTATCTTAACACCATCTGTGGTGGACCCAGTCAGGTAAAGGCCAAAATCATCATGGGCCTTAGGGCAGGGTTCGAGGAGGAGTGTGAGAGGCACTGGGCATTGAATAGGGAAGCTTTGGGGATGAGACAGCCCAGAGTAGTGAGAGAAGAGTAGAGTGCACAAGGGCTTAAAAGCCAGCTTCAATTACCAGCTCAAGGTGGCAGCCAGAGTTATTTAGTTGCTTTAAAGGCAACCAACGCACAGTGGGTAGGGGCGAGATTGGTAGAATTATTTAGAAGTCTGGGGTTGTAATCCAGGCCTATATGGGATAAAAGCCTGAACTAGTTAAAAGTTAGGGGGCTGGCTTCTGAGCGTAACATTTTATTTCCCTTTTTTTCTGGTAAGAACAGATACTACACTTGATCTTAGTCAAAAGGCTGAGAGCTCCTTCCAGCAAGTTCTGCAAGGTCCATCAGAACCACTAGACAGTTACTGACACTGATGCCATCCCTGCTCACAGGATAGATGTTACAGATTTTTTTTTAAACTAGAACTTTTAATTGGAGGATCTTGAATTTTAGCAGTTTTAAGAATAACCGTTTAATTTTTTCTCTCAGAATTTTGTACACTGGTTCATCTTAAAACATTTTTCCAAAGAGGTACTCAAATATGTCATTTACCTATAAGCCATCATGCCATCACTTAGTTAAGACTGTTTTTACTGTTTCAAGAATTTGATTTATCCTTCCTTTTGTCTTACTGTAG
Seq C2 exon
GAAAAGAATGCCTCAGCCAGATGAGGAATACTGTCTTGTGTAAATATATTCAAGGAAAACACCTCCACTACCTCACTGACTTCATAATTGGAATGTCACATGGTTTTTTTAATCAAGATGCAGTGAACTGAGATTCTGAAACTCCACTGTAGTTTACTTTGCCTGTACCATTAATGCCAATGTTTTTATAAATCACTTGTACATAGTACATATGGGAATAGTTGCATATGGGAATTTAAACCAACATGTGGCTGAGCCTTTTTTTTTTTAATCTTCGTAACATGTTTAAAAAAAAACAGTGATTTTAACTGCATATTTGAACCTACAAACTGGTAAATCTTATTAACAAAAAGAATGTACTTAAGGCCCTCTTTATTTATAGTGTCGAGTTATTTTTGAATTTTGCTTAAAATCTATTTTTCATATGAAAATAAAAGATAACAATCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000119397:ENST00000373850:32
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.679 A=NA C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCAACTCCGACACTGTATG
R:
TCAGAATCTCAGTTCACTGCATCT
Band lengths:
346-2284
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development