MmuINT0037189 @ mm10
Intron Retention
Gene
ENSMUSG00000030365 | Clec2i
Description
C-type lectin domain family 2, member i [Source:MGI Symbol;Acc:MGI:2136650]
Coordinates
chr6:128892828-128893741:+
Coord C1 exon
chr6:128892828-128892910
Coord A exon
chr6:128892911-128893615
Coord C2 exon
chr6:128893616-128893741
Length
705 bp
Sequences
Splice sites
5' ss Seq
GTTGTAAGC
5' ss Score
4.36
3' ss Seq
TCTTATATTCATATTTTCAGGTA
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTTTGTACATAACATGAATGCCCAGTGTGTACAGAAGCCAGAAGAGGGCAATGGACCCCTTGGAACTGGAGGTGTGCAATGTT
Seq A exon
GTAAGCTACCTTCAATTCAAGTCCTCTGGAAGAGCTGAAAGAGATCTTAACAGCTGAGCCATTCTCCAGACACCTGACCCTATTTCTTTGTCCTGGCGAGCACCTCCTGGGAAAAGTCTACCTGGAGTAATGAGCAGACATCTGACTCTTGCTCCTGATTGCTGGGAACACATTCATAATGGCACCATTGAGAGTGCAGCTGACTGAAGTTGGACTTACTGCTTTGTTTTTAATGGATGAATTTTGTAGGGTTGAAGAAGTTCCTTTCACTTCCATTTTCCACATATTTTTGTTGTTTATTGAGATATTTCTAATTTTTCCTCTTTTCTTATTTTGTAATACATCTAATTACATCAATTTATTTTCTAGTGTTTCTACAACTCCTTCTAGCCAGGGCGCTTTTTATGGAGCCAAAACCAGATTTTTGTTGTTTGCATGTCACTGGGATCTCCACTCCGTCCATTTTTGCTCTTCCATTATTCACCCTGAGTTCAGTGATCAGAAGTCTCCCTGGCAGAAGTTCTGTTTCCATCCTCTCTAGACTTCTTTCTACCATGGACATCCTTTGTGGACCAGGGCCTTCTCTAAAAGGGTTGGCAGAAGCCTTTCAGGAACTGATAGGCAATTGTAAAGCTTTGTGGTGAATTTATTTTATTTTCCTTAAGAAATTCTTAAAAATTATCATTCTTATATTCATATTTTCAG
Seq C2 exon
GTAAAATTGTCCAAGGAAAATGTTTCAGAATCATCTCCACTGTGTCTCCTGTTAAACTTTACTGCTGCTATGGAGTGATCATGGTCCTCACTGTAGCTGTAATTGCTCTTTCTGTTGCTTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030365:ENSMUST00000159866:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTACATAACATGAATGCCCAGTGT
R:
TTGACAAAGCAACAGAAAGAGCA
Band lengths:
206-911
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types