MmuINT0037189 @ mm9
Intron Retention
Gene
ENSMUSG00000030365 | Clec2i
Description
C-type lectin domain family 2, member i [Source:MGI Symbol;Acc:MGI:2136650]
Coordinates
chr6:128842846-128843759:+
Coord C1 exon
chr6:128842846-128842916
Coord A exon
chr6:128842917-128843633
Coord C2 exon
chr6:128843634-128843759
Length
717 bp
Sequences
Splice sites
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
3' ss Seq
TCTTATATTCATATTTTCAGGTA
3' ss Score
9.89
Exon sequences
Seq C1 exon
GTTTGTACATAACATGAATGCCCAGTGTGTACAGAAGCCAGAAGAGGGCAATGGACCCCTTGGAACTGGAG
Seq A exon
GTGTGCAATGTTGTAAGCTACCTTCAATTCAAGTCCTCTGGAAGAGCTGAAAGAGATCTTAACAGCTGAGCCATTCTCCAGACACCTGACCCTATTTCTTTGTCCTGGCGAGCACCTCCTGGGAAAAGTCTACCTGGAGTAATGAGCAGACATCTGACTCTTGCTCCTGATTGCTGGGAACACATTCATAATGGCACCATTGAGAGTGCAGCTGACTGAAGTTGGACTTACTGCTTTGTTTTTAATGGATGAATTTTGTAGGGTTGAAGAAGTTCCTTTCACTTCCATTTTCCACATATTTTTGTTGTTTATTGAGATATTTCTAATTTTTCCTCTTTTCTTATTTTGTAATACATCTAATTACATCAATTTATTTTCTAGTGTTTCTACAACTCCTTCTAGCCAGGGCGCTTTTTATGGAGCCAAAACCAGATTTTTGTTGTTTGCATGTCACTGGGATCTCCACTCCGTCCATTTTTGCTCTTCCATTATTCACCCTGAGTTCAGTGATCAGAAGTCTCCCTGGCAGAAGTTCTGTTTCCATCCTCTCTAGACTTCTTTCTACCATGGACATCCTTTGTGGACCAGGGCCTTCTCTAAAAGGGTTGGCAGAAGCCTTTCAGGAACTGATAGGCAATTGTAAAGCTTTGTGGTGAATTTATTTTATTTTCCTTAAGAAATTCTTAAAAATTATCATTCTTATATTCATATTTTCAG
Seq C2 exon
GTAAAATTGTCCAAGGAAAATGTTTCAGAATCATCTCCACTGTGTCTCCTGTTAAACTTTACTGCTGCTATGGAGTGATCATGGTCCTCACTGTAGCTGTAATTGCTCTTTCTGTTGCTTTGTCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030365-Clec2i:NM_020257:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACATAACATGAATGCCCAGTGTGT
R:
TGACAAAGCAACAGAAAGAGCA
Band lengths:
190-907
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: