MmuINT0043177 @ mm9
Intron Retention
Gene
ENSMUSG00000032515 | Csrnp1
Description
cysteine-serine-rich nuclear protein 1 [Source:MGI Symbol;Acc:MGI:2387989]
Coordinates
chr9:119886120-119893776:-
Coord C1 exon
chr9:119893752-119893776
Coord A exon
chr9:119886364-119893751
Coord C2 exon
chr9:119886120-119886363
Length
7388 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
TTCCATTATCTTCATCCCAGGCG
3' ss Score
6.9
Exon sequences
Seq C1 exon
CTAGACGTTGTTGGGATTCCCTCAG
Seq A exon
GTGAGCAGAGTGAGGGTGAAACGTTCCAGGCGGTGCAGTCAGAACGGGAGAGAAAAGCGCTCTAGGTACTGGGTCGAACTGGCCCTGCCGTGGGCTGACGAGGACTCGGGTGGGCTCCTGAGAGAGAAGTTGACTGCTAGAACACACTTTCTTCTGCCTAGTAGTACAGGGAGTTGGCTGCGAGCCTAAGGAAGGTCTTGGCGGGAGCAGAGGAGGCAGCAATCCGCTGTAAGTAGCCAGGGTCCGGCCTAGGAGAAACCAGATTCTTTTTTTTTTTTTTTTTAAGGAGGGATGGGGGTGGGGAAGCTGGTTCCAGCAATCTCTACTTTAGGTATTGTTCGGAGTAAGGGCTCTGGCCCGAGGGCAGAGGTGAAGGCCAGGCCCTAGGATGACCTTTTCTTCTCTCCTCATCCCTGGCTGGTCTCCAGTCTGAGCTAACTTTCTGCGGGATCTGGGAAAAAGAGGTGGGGTGAGGGCCGGGGAAGGGTCCTCAGATTGAATTGATAATAATCTGCCCTGGGCGGGTGGAGGCAGGGGAGGAGCTTCCATCGCTCGCAGCCTCAGTCTACCCAGTCTGCAGCTCGGGACTGCTCGGCGTGGAGAAGCGGGCATCTCTAGGACCCGGCTCTGCACGAAGCTCGGCTCCGCGATCTTAGGAGCCGAGCGCGGAGCAGCGGCGTCGCGGCCCGGTCACAGTCCGCGGGGAGGCTCGAGGCGGGGGAGGGGGCGGTGCCTCCGGGGCGGGGCCGAAGGCTGCGGGCTGCGGGGCGGCCTGGCGGGAGGCCCGGCGTGCGTCAGCGCCGTGAGCCCCGGAGTTTTCCACTGACGAGGAGGGCGGAGCCGCGGGCGGGGCCGGGGCTGAGCCAGTCTCTCCCGCCGCCGCCGGACGCGCAGACCTGGGCCGGCTGCACCGACGGCCGCCCGGCCGAGCGCACTGCGGGTCGCTGTGTGCGCTGCGACCCTGGGGCCGGCACACGAGTGGCTTCGGTGAACTGGGCGAGCCCTGCTAGCTTAGGTGAGTGCCACGGTTCCTGAACGCGGCGGGATGGGAAATGGGGCAGGGGGCGTCTCGGGTGAGTGGCGCTGTCACTCCAGCTCCCCGCTGATCTCCCTTGGGTCCTCCGGAGGGGACGCCGGGATCCGGCCTCCGAGCCCGACTGGAGATCTGGCGCCTGGAGTGAGAGCCCACGGCTGCGAGGTGGCGGGGGGGGGGCAGGCTTCCCCTCCCCCGCCTCGTTGTGGTTACCCCAGATGTCCAGGCGCCCCAAAGCCGGGCGCAGGTGGCAGTGGGACGGGGCGCGCGTGCCCGCGGGTGAGTTTCCTTTTGACCTAGTTGCCTGAGAACTTTTCAGAAGTTACTCGCGTGGCCGGGGCAGGTGACATTGGTCGTCTTCCTCCTCGGGCTCCCTAGGGGGAGGGTGCCCGAGCTGCGGCGTGTGCCGGGCGCCCTCGGCAGGCGGGGGTCAGGGAGGGTTTGGAGGGATGAGTGAGGAATGAGCGAGGCTTGGTGAGTCACGGACCCCGGGAGGGAGGCGGGGGGGAGAAGGATTGTGTCGTATGTTCACCTGTCACCGTCACACTCAGAGGCCACTGCCGTGAGTCACCGGGGCGCAGCTACACCGACCACCCGCGGGCACACGTAGGCTCTCTCCCACGCACCTCTACTCCCTCTTCTGCATGCATTTCCTCTCCTTCCTCAGTTTCCCCTTCCCGGAGGTCCTTTCGCCTTCATGTACTGTAGAAAAGCCTACACCACAGCAACGGCCACACACTTAGTCACTCGGGTTGCCGATACAGTCACTCCCAGATGTAGCCCACCTTCCTGACAACAGAGAATTCCTCCCTCCTCTCTAGCTACCCACCCAACATCTCTGGACCGAAGTCTCAGCCTTCTGCAGAGAGTAAGTCAATACTCTCTGCCCCCAAATCTTTGACAGCCCCGCCCACATCTCCCGAGCTGTCACCAAATCCACCCCCTTTTCTCCTTTGCGCTTGTCCTGTCAGTTCACCTGGCCCTACCCTGTGTCCTACGGGTCACACCCTCTCTGGCTCAGGCGCTGAGCCATCTTTCAACCATGCAAATCTAGAATTGTCAGTCCTTACTTACGCACTTGGGTGGCTTCCTGTGCCCTCGGGCTAACACAGGCCCTCTTAGTTGCATCGCCACCAGAAGGCGCACTGGCTGTCCTTGCTCCAGTCCCTGTACCATGCAGTGTGACCCCCCCCCCCCAATCTGGAACTCTGCCAACATCCCTCCTTCAGAGGAGCCTGCCTCGTCCCCAGTTCTACCCTTCTTGCCTATCCTGTATAACTCCTACTTGAGAGGTGTTAGTTGTAGGTGCTTTACCTGTGTGCCCAATGCCTGTCATAGTGTTTGGCCTTTAGGAAGCTTAGCCAGGATTAGATTGATGAATGAATGAATGAATGTGAAAAACTGGCTTAAGGTGGAGGAAGGGGTGACTGTCAAGTGCAGTTTTCCCTGGGTAGAACTGAGTATTTTATACAGCCAGCAAACATTTGGCATTTACCCAGGGCAGGGCCCTGGAGTCTGAATCGAAGGAACTGTCCCCTCCCCCCATCACTTTCTGAGGCATGGGTGGGGGAGGGGTACGTCAGTGCTTCCTGTCTGCTGTGTCTTGAGCTGCCCAGCACTTTGTCTCCGTGAACTGCTTGTAGGTGATTTTCCGCATCCCAGGAAGCCCTTCAGGAGGGTCTGGGGTCCTGTGACCCTAGGTGTTGGAGGTGGGGGCATGACTGATCAAGACCTGGGGTTCTGAGGTCAAAGGACACATTCTTCAGATTCCTGGAAGGGGGAATCAAGGCCGCCAAGGGGCTGGGGACTGGAGCACACTGGCGGGCTGAGGCTTCCAATAGCTGCCGCTTGTTGCCTGGGTGGAATAGCCTTCGCTGGTTCAGTGTATTAAATAGCTATGGTCACTAGACTGGGGTGACATTCCGTTCTCTGGGCTGTCAGCGCCTGTGTGTGGTGGCAGGAAGGGGGCGGCCCCAGATTCTGCTACCATCCCGGAAGGAGCCCGGTTCTCTTTGATTCCGGGGCCTGCCTCTGGGGCTCCTCAGGGGGTGTGGTGTTTCTGTCTGAGCCAGCTCCTGGGAATGGCTTTTCCTTCCTCCAGGACCCTAGGACAGGACTGTGTTCACCCTGGGAACAGGATCTTGAGTCCTGAGTAGCTGCTGCAGCCCTACCCCCACCCCCTGACTCACTGTCTGGCACTTTTCTTGGGCTCTTCAGCTATCTTTCATTCCGTTTTCTGACTTGGCCTCCTCTGCTGCACAGTCTTTCTGTCTCTGCCTTCTTTCAGCCTCTGGATCCCAGGTGGCACTCCTCCCTCCCTTCTTCCCTCCCTTCCTCCCTCTCTCTCCTCAGACCCAGCCAGGGCTCCAGCACTCACGCCTCAAACAGCCTGGCCTTTCCAGAACTCTGCCTGAAGCTTTGAATGTTAACGCTCTTCAGCCTTAGTTCTTATCTTGGGTACACTCAGCTGTGGATCTCTATCCAGTCCACACCTACCTCTCTGACATCTGTTTACTCTTAGGGACCCGGAGCCTCTGAGATGCCACCTCACACTTGCACTCGAGTGAGCCTGTCCCTGTCTCCTTCCCCTTCCCCCCCTACCCCGTCCTCAAAGCCACCTTTGAACACTGTTCTTGGCTCAGCCAGCTCTGACCCTGGCTGGGGGATGGGCATGTGTCTCCTCATTAGATTAGCTTTCAGGGCCAGGAAAACTAAGACCCCTGCCTGGGCTAAAGCACTGCCTGTGTCACAGTCCTGCTGCCCACTCTTCTGGGCCTCTCTCTGCCAGGCTTATTATGGCTATGCAAAAATAGCCTATAGCCAAGCCTTGTGTGAGGAGAGGCCCGTTACACTGTGGTCACTTATAGCTCTTAAAGAGTTGAACCCAGGGTTTCAATGTGTGCCAGACAGCTGACCTATGTCCCTGGCACATATGGAGGCAAATGTCTGCCATCCCAGCACGTGGGAAGTGAACGAACACTGGAGGATCAGGATAGAGGCCATCAAGGGCTACTCAGACTCTCTCAATCAAGATCTATTATTTCCTAAAGCACTTGCCTCCAAGGTCATGACATCGGAGATTAATCTTTGATTTGGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGTGTTCTGTTCATAGCAGTATCCCCAAAAGGCAGAAGAAAGTGTGTGTGGGAGGGTGGGGGGGCTTTTGATGTCCTTTTGGAAATAACTTTTTGGAGAAGAAGGTTTTTCTCTGTAAATCAGGTTGGCTTAAACTCCAGGCAATTCTCCTGCCTCATTTGAGATTGGATAAACATGAGCTATGATACTCAACTCAGAAATGACTTCTGGAAGGGTGTAAGTCTTGGTGGGCTGTTCCAGTCTTTGAAGAAGGTAGGGAGGATAGCAGGGACATGGCCTTGTGGGGAACTGCAAACAGTGGTGCTCAGCATGGGAACTGCAAACAGTGGTGCTCAACATGGGGACTGTAAACAGTGGCACTCAGCATGGGGACTGTAAACAGTGGTGCTCATGTGCAAACAATGGAGCTCAGCATGGGGACTGCAGACAGTGGTGCTCAACATGGGGACTGTAAACAGTGGCTGGCGTTCAGCATGGTGTTTTCTTTCTGTCATTTGGCTGTGGGGTATAGGGTGGCTCAGAAGAGACTAGATGGTAGCAGGTGGGGGCAGACACAGAACAGGTGATAAGCTCCGTGTGTGTGCTGAGAAGCCACCTCAGGGCTTTGCAGGAGCCCTTCAGGGAGCTCCACCATCAGGTGACCTACATAGAACAGGAATACAGTCTAGGAATGCCACTCCTGCAGTGGAGGAATTGTGAAGCATTTAACACCCCTGCAAACCTACCCAGGCCAACCTCTACCCATCATCCTACCCCCACCCCCACCCCCAGGAAATCCCCTCACAACTGTCCCCTGGTCCCACATACCCCCTCCTGGGAGATTGTCCTGTCCTTTCACCTGACTGTGGAGAAGGCAGGTACAATGCCTTCTAATTGGGTCTCCCCTTTTGTCAATCTCCCATTTGCATTTTCTGTCGAGTTCATGCCTGTGTCTCCACTCAGGAGTCCTCGGGCTTACTATCATTTACACACTTACTGAGCACACGATTCACTGACTGAGGACTTGACATGTGTCCATTCCTGTATTCCACCCAGCCATGTGAGGTTCTAATGTGTGTTTATTTCCTTCGAGACGCCGTCTCCCTTAGCGGAGGCTGATCTTGAACTCTTGATTCTCCTGTACCTCCAGAGTACTAGGATAGATATCAAGTGTGCACCACCCTGGCTTGCCTTCTGGGACCTTCAGACAATTGGAGACAGTGATGTTGAGGGACCTACCCAGGATCACCCAGCCAATAACCAAGGCAAGGTCCAAATCAGGCAGTTGATTTTGGCCTCTAGGATATGTCCCAAGTCGGTGCCTAGCCTGTAGGTGAACTTCCAGGACTGAGACTGCCTGGGTGTGGGTGCAAGAAGAGGGGAGGGAGAAGCTGAGGGTGGCTGCAGGCTGCAGGTTTCTGGCTTGAGCAACTGGGTGGGTGGCTGCAGTTACTAAGACAGGGAACACAGGAAGAGGAACAGATGGCATGGGGAGGGAGCAGAGAGGTTCAATTTGGGGCCTGTGAAATTGTGTATTTCCAGGAGAAGTGGGTCCTTGCTTGGTTTGGGGGTCTTGGACTTGTGCCCTTAGTCTCACAGGAAACAACTGGAATTAGAGAGGGAGGTAGTTCCCCCCCTCCCTGTGCATTAGGCTGTGGTGGTCGCAGGATGTTTAGGGGGCTACCTGTCAACCTGTGTGTATGAATGAGTGTGTCTGTGTAAGGATGCGTGTGCCCGTGTGTGTGATGCCTGGCTCATGGCCAAACACCCTCATCTCCTGGGAGAGTCTACAGACAGGTTAACTGGGCTGTTTGTGTTTGTGGTTTGACTCTGGGAAGCCGGGTAACCTAGCCTGAGAAACTGCCCCGGAAACACCTGCGTGTCCTTCTTCCCCCGGGCCTGGGGTGAGGGCTTGACCTGGTAGTAAGATTTTCTTGAGCCTCTCCCATGCCTGCCTGGAGGAGATAGATGGCTGTTCTCCATTGAGTACTTTTATCCAGTGAGTTGACAGCTGGCGCCCTCCGATTTAGGGACCTGCTGGGAGGTATAGGTTAGGAGAAGGGACCACAGGATACCTTGGTGAAGGAGACCCAGACAGCTTTCTGCTTAGTTTTCCTGCCTCTTTCACTTCCTGTGATGGTGGTGGGGGAGGAGTCCCCAGCTGTGGGCATTCAACCCTGAATGAGTGAGTAAGGCAGACTCAAGACAGCGACACAGCAGGTAGCTGCACTCAGCCACCATCCTTGAACCCACTGAGGGTCTCCAGGTCCTGGAAGGACTGTTACTTGTCTGAGCACTGGGGGGTTAGGAAAGGAGCTTTAACCCCCTCCAGCCTGACTGGTGAGTGAGTGCATCTTACCTAGGTCCAGAGAAGCTACAAAGGAGCAAGGGAAACGGGAGAGCAGCTTTTCCTGATCAGTTTCACTATTAGAGGTTTGTTTTGTTTTAAGGAGAGTTAACCATAATGGTGAGCTATTGAAGGTGAATTTAAGATCAAAGTGAAGTCTCCTGCCACAGTCCAGCCTAGAGCAGGGGACTTTTCTCCTGTGGCATGGGGGTTTCTGAGGGAAAGTCTAAGCTCCATCCCAGGGAGGGGAGGGGCTTGGGAAAGTCCTTCTGCTGGGAATCCAGCCAACATCAAAACCAGTGCCCATTCTCAGAGCTCCTGTTCAGCCTGGCCCAGGAGCTGACCTGAAGCTGTCAGTGGGCAAGGCGGTGGACCTGTGTGGTGGGAGAGGAGCGCCGCTCTGGGGGGGGGGGGGTCGTCTGGAGATTGTAGAAGGCCCTGCACAGGCAAGTGCACAAAGACCCGAGTGCCTGTGAGTCAGCCTCCAGGATTCCTGTGAAGATGAGCCAGGCTAGTTCTGTCAGTCCATCTGTTGGTCTGTCTGCCTGCTGGCCTGTGTGTGTGTCTGGTGTATGAATGTGTGTAGGTGTGTGCATGTATGAATGTGTAGGTGGCAATGGGGAAGGTACCTGGCTGTTTTCCAGAGAAGGCTTGTTATCAGGGGCCAGGTCTTGGGAGGCCAAAGTGTCTGGAACTTGGATTTGCGTGTTAAGACTCATTTGAGGGAGGAGATACTACTGTGTTGATTGGGGCTGGGGACCCTACTGGAGACACTACCATGAACCTGCTCTGGCTGGGCTGGAGGGCTCAGAGTCTGGGAGATACCATGGAAGGTATGCAGGGGAAACATGGCTAGGCAGGGAGCCTATCTCTTAATCGTTCCATTATCTTCATCCCAG
Seq C2 exon
GCGTCTGTCCTCGGCTGTTGGAACCCCCTACATTCCACCATGACTGGGCTACTGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTCCAGTTCCTCCTCCTCCTCATCGTTCTCTAGCCGGCTCTCTCTCTCCTCCTTCCCCGCCTCTTCTGCCTCCCCTGCCTGGAACTCTGATGAGGAGGGACCAGGTGGTCAGGCACCCCAGTCTGATCAGGACTCCTGTGGCCTCCAGAGTTTCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032515-Csrnp1:NM_153287:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.652
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: