BtaINT0044801 @ bosTau6
Intron Retention
Gene
ENSBTAG00000003845 | CSRNP1
Description
cysteine-serine-rich nuclear protein 1 [Source:HGNC Symbol;Acc:HGNC:14300]
Coordinates
chr22:12526043-12532806:-
Coord C1 exon
chr22:12532680-12532806
Coord A exon
chr22:12526291-12532679
Coord C2 exon
chr22:12526043-12526290
Length
6389 bp
Sequences
Splice sites
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
3' ss Seq
CTCTCCCGTTCTCATTCCAGGCT
3' ss Score
10.48
Exon sequences
Seq C1 exon
CTGGGCCGAGTGCTGCCCTCCGAGGGAGCTAGCGAGAGAGCGAGCGAGCGCGGGGTCGCGGCGCAGGGGGCGTTCCCGACCGGGACGTGGGTCGCGGCGTTGCCCTTGCCCAGCGTCCGGACCTCAG
Seq A exon
GTCAGTACCGGGGGCTCCGGGCCGGTGGGACAGGACTTTGGGGAGGGGGCGTCCCGCATGGAGGGCACTGCCCCCCAGCCCCTGACGTTTCTCCCTCGCCACTTTGAGAGGGCACCGGCGCGGGGACAGCCCGGTCCCGGACGGCGCGCCGCGGCCGGAGTCCGGAGCCCGGGAGACGACAGTCGCAGGTTTTCTGCTGCCCTCCCCCCGCCCCGTCGCCGGGACCCCAGGAGGTCCCGGCGCCCCGTCCGCCGGGCGGGTGGCGGCCGAGCCGGGGTTGCGCGCGGGTGGCGGGGTGGCGGCGGGCGCGCGTCCGCGGGTGAGTTCCCTTTTGACCCAGTTGCCTGAGAACTTTTCAGAAGTTCCTCGCGTGGCCGGAGCAGGTGACATTTGTCGCCTTCCTCCTCGGGCTCCCCCCGGGGGCGGGTGCCAGGGCTGCGGCGAGTGCCCGGCGCCCGTCAGGGAGGGAGTTGGAGGGATGATCGAGGAATGAGGCTCCGTGAGTCACGGACCCCGGCAGGCGGGGAGGGGGAGGAGGAGGGATTGTGTCGTACGCTCACCTGTTCGTCAGTCACCGTCACACGCAGAGGCCACCGCTGTGAGTCACGGGCGCAGCTAGCCGCGGGCACCCTCGGGCACACGTAGGCTTCTCCCACTCAAGTCTCCCTCCCCAGCACCTGCTTCCTCCCGGTCCTCAGTTTCCCCTCCCCGGGGCCCCTTCCAATGGCAGGACACTGTTGAGATGCCCACACCACGGCAGCCGTCACACACTTAGTCACTCCGGCTCCCCAGCGCGTCACACACACAGCCCACACTCCTGACACAGAGGGTCCTTCCCTGGCTCCCCTGCCCACCCGACACCTCCACTCAGATGTCTCACAGCCCTCTCAAGCAGAACTCATCCCTTACCCCAAATCCTCAACATCACTGCCTTTTTTGTCCCCACCTCCAGAAGTCACCAGGTTCCATTCCCCTTTCTCCTAAGCCTTTGGCTTGTCATCTCTAACCCACCTCTGGCAGCTCCGTCCAACCCGTCACACCCCCTCCTGTCCACCCCCTCCTATCCACCCCCTCCTGTCCCACCCCCTCCTGTCCCACCCCCTCCTGTCCCACCCCCTCCTGTCCCGTGCTGAGCCGTCTTTTTAAAATGCAAATCTGCTATTGTCACTCCCTACTTCAACCCTTCAGTGGCTTCCTGTGCCCTTAGGCTAAAGTCTGCCCTGTCAGCCCTGGCTCCCAAAGTCCCCTCCCAGGTAGCCCCTTCCCCTCCATCTCTTTGCCTCTTGCTCCTAAAGTCCCTCAGGGTTCCTATGCCCCCCTCTCTCTGGAACTTTTACTCCATCCTACCTTTTCCTCCGAGAGACCTGTTTTCACTCCGAGCTGTACCCCTTCCTGGCCTCCATTCCAGCACTCAACAGGATTCATAACTCATTTTTCTATTCCCTAGTAAACTCAAAGCTTCCAGGAGGGCAGTATTGTCTGTGTCTTGCTCCCTGTATTCCCAGCGCATGACACAGTGCTTGGCATGTCATAGGCACTCAATAAATATTTGTTGAAAGAATGAATGGATGAATGGCAGTGAAGGGGGCCTTGCTTAGGTGGAGGATGCAGTCTCTGTCAGGTGCAATTCCCCTTCTGCAGGAGCAGTTGCCTCGTGTAGCCAGCAAACATTTGGCGCTGCCTCCCCAGTGCCAGGCCCTGGAGGCCAAGGCTGAGGAACTGTCCCCTCCCCCTGGGGGATGGGTTGGGAGGGGTGGGGATGTACCGGGCCTTCTGCTTGCCCTCTCTGGGCTGCCGTGGCTGTTCTTCTAGCCAATACCCATGGGGGTGTGAGGTGCTCAAAGGTGTCCTCCCCTTCTCCCAGGAAGTACTTCCTGGGGGCCTGGGGTCATGTGACCCCAAGTATTGGGGAGAGCTGGCCAAGGCCTGGGGCTCTGAGGTTAAAAGACACATTCTTCAGATTCCTGACAGAGGGTGGAGGCAGCTGAAGGTGCCCCTTTTCCAATACCAGCTCTGACTTGGGACTGGAGCATTGGGACTGCTGAGGTCGAAGAGGAGTTGGTGTGACTTTTCAGAAGCCTGGGGATTCCCGCCCCTTAAACAGCCTTTGTTTGCTTGGTATCCAGGGTGAGGTGGCCTTCCCTCAGTTCACACAGTGTGGCCTGAGTGTGTAGATAATTGTGGCGAGGAGGGAGGGAAGCACCGCCCCCACCCCCCACCCCCCAGTCCTGGACTGTCAGCTCCTGTGAGTGGTGACGGCAGGGAGGGCCTGATTCTCAGGGCCCAGGCAGATCCCGGAAGAAGCCTGGTTCTCTTTGATTCAGGGTCTGTCTCCGGGGCTCCTTGGGGGTGTGGTATTTCTGTCTGGGCCAGCTCCTGGGAATTGCTTTTCCTTCTTCCAGGACCCTCGGAGGGGGCTGTGCTCACCCTGGGAACAGTGCCACGGTTGGTAGGGATCTTGATTCCTGGGTAGCTGTGGAGGGCCCCTCCCCCACCCTCTGACTCACTGTCTGACACTTTTCTTGGACTCTTCCACTATCTTTCATTCCTTTTCTGACTTGGCCTCTCCTTGTCTCTGGCTGAGTCTTTTGGTCTCATCTGCCTCTGTCTCTCTCAGCCTTTGGATTCTCAGGTGGGGCGCCCGAGCACAAGATCCAGGGGCTCCTCCTCACCGCCACCCCGGGTCAGGGAGGACGTGTGTCCCCATTTCCAGGTCTGCAGATTTCGCTAGGTGCTCCTCACTAGGAGGTGCGTCATGGCTATGGCTCCCCAGTGTCCCCGTCTGCGTCCCTGGAGTTTACAACCCTCTCCCCTTAAGCTCCCGTTCTATAGACATCCCTGAGACAGAGCCAGGGTGTCTGGCTTGAACGGGCTTCCCTAACACTCTTTCTACTTGTTTACTATTGGGGAACCTCCTGAGATGCCTGTGTTGGCACTTGCTGGCAGCAGGAGCTTCCTTTTCCTGCCCTCGGAGCTACCCCCTCCTGGGTGCTATTCTTGCTCAAACCCTCAGGCGCAGGCTGGGGGATGGGCATGTCCGCCCTCATCCCTGCCCCAACTAACTGTGACCCGAGCAGGAGGAGGGCACACTGACCAGTGGACCCCAGAAACCTCATGTGCCTAAATCGTCCCTCTGTGTATACTGCAGTGCCAGCCTGCCTACCTCCGATGGTCCTCAGGAGCCTTCTCTGTGCCAGACTATTCCAGGCACAGGCACAATGCCGACTAGCAGAGAGGCCTTCAGCCCTGCACGAGGGAGATGAGCAGTGAGGTGGTCACGGGAAGGAGCCATAAGAGCCTTGATGGGGGAATCCCATGGTTCACGGAGGCCCAGAGAGGCATGTAGTGGGGAGGAGGAAGGGTGTCAGGGAGGCCCTCTGGGAGATGACTTCTTAAGGGGATTGAGGCTGGGTTCCAACTTGTGCAAAGGCCAGGAGTGAGAAGGTCATGCCTGTTAGGGCAACTGCAAGTTCAGCTGGAGTGTAAAGTGAGGGGGTTGGGAAGAGTCTTGCATGAATCTGGGGGCTAGGCATACTTCAGCCTCTTGGAATTGCGGACTTGATCCTAAGGGGGCACCCCTTAGGGAATGATTCTCTGCATGGAGATGGTGGGCAGACACTTGGTTTAATAAGATCATTCTAGCTCCAGGGTAAAGAGTGGCTGCAAGGAGAGGGCAGGAGACGGGGACAGTATCAGTGGGACAGAGACGTAAGGGTAACAGACTTTCAGAATTGAAGGTGACGTGTGTAAAATGCACACAGTAGATGAATCTTAGGTGTGCAGTGAGATGTTTTAGTGGAACCGCCACCCAGACAACACAGAACACTTCCAGATACTACTACCCCCTCCCGGCCCTGGGAAAATTCCCTCATGACTGTCTCCAGTACATGCCCTTTTCCACCCCCTGGGTAATCACGATTCTGACTTGTATCATCACCGATTGGGTTTGCCTTTTCTTCAACTTCATTCACATGTAATCTTGTTTCTGGCTTCTGTCACTCACCATGCTATCAGTGAGAACCATCTGTGTCGTGTGTATCCAGGAGCTCGTTTTTTTTTTTTTCCCCCTCGGTGTAGAATGACACATTCAGCAAGCATTTACCACTGTTCTAAGAACCTGACATGGATTGATTCACTAAACGTCCCAACCCTATTCGGTTGTAAGACAAATTGAAAACCCAGAGAAGTTAAGGAACTTGCCCAACATCACCCAGCCAACTGATAGCCACTCCAGGGTTCAAATGTGAGCAGTATGGTTCTGGAGCCGAGGTTCTCTTCACACTCTGCTGGGCAGCCTCTGTGATACCTGCCATGTCGGTGCCTGGCCTTGTGTGGATTGAATGAGCTAATGTCTACTTACAGGACTGGGTGACTGGATGTGGATGGAGGGCGACAGGAAGGAGTTGAGGATGACTGCAGGTTTCTGGCTTGAGTAACTGGGTGGGTGGCAGTGCTGTTACTAAGATAGGGAACACAGGAAGAGGAACAGATGGCATGGGGAGGTGGGGAACAGAGACAAGGGGTTCGATATGGGGCCTGCAGAATTTTATGTTTCTAAGGGCTGGCCAGGCAGAGACCAAGTGAGCATTTGGTTTGAGGGAGTCTTTGGCTTAGGTGTGTGACTAGGAAGACATTCAGCACCCTTTAGGCAGCATCTGGAGTTGGGGAAGAGATGGGATCTCACAGTGGGATTGTGGTAAGGACAAGATCCTTGGGTGTGGTTTGTCGTGTGTGTTTCTGTGTCTGGGTGCCTCTGGGTTCTGCGCGTGCGCTAGCGTGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGCGTGCGTGCGTGCGCGCGTGCACACATGCATCTACCTCTGGGCCATGAGTTCCCCCATCTCCTGGGAGAGTCTTCAGGTCAGCTGAGAGCTGGGTTGTTTTTGTTTGTGGTTTGACCCTGGGAGAGGTGGGGGGGTGCCAGGCCTGAGAAACTATCTGCTGAGAAGCCCCCGGAAACACCTGTGCGTCCTCTTCCCCTGGGCTCAGCATTGTTGGAGGGTTGGCAAGTCGCGGAGCTTCTCTTGCTGCTCTGGTGCCTGTGAGGAGAGGCTGTCCCTGGGATGAATTTTACCCAGTAAGTTGGTTTGACAGCACACTGCCTAAGTCTGGGATCCAGGGACTTCGTGGGAGGCTAGGCCAAGGGGTGTTTCGAAAGGACACCTGAGCAGGGGAGATTGCCAGCCTTCTGGTTGGCTTTTCCTGTTCGCTGTCGTTTCCTGTGCTGCGGTGGGGGAGGGGCTCCCAGCACTGGGGCCTCTGCGCTGCCGTTTCCCCTTCCTCCTGGTGGCCTCCTGGGGCCCAGCCCTGAGTGCTCACTGGGTATCTGGGCTCAGCCCTAAGGACCAAGTCCTTTGGGGATTCTCGAACAGTGGAAGAGGCTGTCAGGAGAAACCCCAAGTCCCCTTCCCTCATGTGAGGCCAGCCAGGCTGTGAGAATCTCTGGTTGCTCTACTGAGGAGGGCTGAGACCCTTAAAGGGGAGACACAGCCAGCGGTGTGTCCTGGGGTGCTCCAGGTCACCCGACTGCAGACAGGAGGAGCATGGAACCTCAGCGTGGCTGGTCAGTTGCACTCCAAGAGGGTTTTTGTTTTTTAAGGGCAGAGTATACTTTCCTTTGAAAGTTAATTCAAACAGGGTTAGAAATTGGAGTGGAAGGCAAGAAGAAGGTGAATTTTGAAGATCAAACAGGAGATATTAAAGAGCCACGAAGCCCAGGTGGCTCTGGTCCCACAGTCAGGCCTGGAGGTAGGGGACTTCTCCTGTGGGCGGGGGTTTCTAAGGGAAAGTCTGAGCAGCTCCATCACGGGAAAGTTGTGTGTTGGAAATCAGGGGTGGTGTCCAAGCCAGCCTGTTCCCTGGAGTGCCCTGGTCAGCCTGGCCCTGAGTGAGGGCCTGTCACCAGTGTGTGCAGGGCGGCGTGTCTGTGGGTGTGCTGGGAGGGAGGAGGGGGAAGCAGCCACTGTACGAGGGCTGTGCAGGCTGTCGGCATGCACCCGGCCTCACACACACAAAGGCACACAGATGCAGCCGTGTGAATCACCCAGCCAGTGAGTCAGCCCCCGGGATTCCTGCGGGGGAATGAGCGAGGCCAGGCTGAGGTCTGTCGGCCCATCTGTTGGTCTGGTGTATGTGTGTGTGTAGGTGGGTTACAGTAGGTAGTAAAGGGGAAAACTTCGTTGGTGCAAGTCTGCAAGCGCCAGGGTGAGGGTTTGAACCTCAGGGCTCCATCCAGTGCAAGGCAGCCTCCTGGAGTCCTGGGCATCCTTGGGGGGGTGGTGGGAGAAGCGATGACTGGGCCTGGGTGCCCACCTCCTGCCCTCAGGCCTGCACCTAGAGCTCTCCCGTTCTCATTCCAG
Seq C2 exon
GCTGGCTGTGCCCAGGCCCCAGAGCACCCTCGCCACCATGACCGGGCTGCTGAAGCGGAAGTTTGACCAGCTGGATGAGGACTCGTCCTCGCTCTGCTCGTCCTCCTCCTTGTCCTCCTCGGGCCACCACTCCCCTTCCTGCTCCCCCAGCTCCTCGGTTTCCCCGGCCTGGGACTCGGATGAGGAGAGCCCTTGGGATCAGCTGCCCTTGCCTGACGGTGACTTCTGTGGCCCCCGAAGTTTCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003845:ENSBTAT00000005016:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.225
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]