HsaINT0042476 @ hg19
Intron Retention
Gene
ENSG00000144655 | CSRNP1
Description
cysteine-serine-rich nuclear protein 1 [Source:HGNC Symbol;Acc:14300]
Coordinates
chr3:39187969-39195102:-
Coord C1 exon
chr3:39194929-39195102
Coord A exon
chr3:39188214-39194928
Coord C2 exon
chr3:39187969-39188213
Length
6715 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CCTTCTCATTCCTATTCCAGGCT
3' ss Score
9.74
Exon sequences
Seq C1 exon
GGGCGGGGCTGGGCGCAGGCAGTCTCCCGCCGCCGCCGCCGCTGCCGGACGCGCAGAGCGAGGGGCGGCTGGACCGACGGCTGCCGGGCCGAGCGCACAGAGTCGCGGCGCAGGGGGCGTCCCCGGCCGGGACGCGGGTCGCGTCGTTGTCCTCCGCGAGCGTCCGGATTGCAG
Seq A exon
GTGAGCGCCGAGGGGCCTCGGGCCCGGCAGGACGGGACTTTGGGGAGGGGGCATTCAGCGCGAGTGGCACTGCCGCTCCTGCCTCCTGCCGTTCACTCCCCGGCACCCTGAGCGGGCGCGGGGGCTGGAGCTGCCCGGCTCTGACGGCGTGCCGCGGCCGGAGTCGGGGGCCGGGGGCCCGGCCGGCGGGAGTCGCAGGTTTTCTGCTCCCCTCCCCCGCCCGCCGCGGTAACCCCGAGAGAAGTCACGGCTCCCCGAGCTCGGCGCGAGTGGGGACAGAGCCGGGCTTGCGCGCGAGCGGCGAGGCGACGGGGGCGTGCGTCCGCGGGTGAGTTTCCTTTTGACCCAGTTGCCTGAGAACTTTTCAGAAGTTCCTCGCGTGGCCGGAGCAGGTGACATTTGTCGCCTTCCTCCTCGGGCTCCCCCCTCGGGGAGGCTGCGGGAGCTGCGGCGTGTGCCGGGCGCCCCCGGCCGGCGGGGGTCAGGGAGGGAGTGGAGGGATGAGCGTAGAGGGAGGCGCGGTGAGTCACGGACCCCGGGAGGGAGGGATTGTGTCGTAGGCTCACCTGTTTGTCAGTCGCCGTCACTCTCAGAGGCCACTGCTGTGAGTCACGGGCTCAGCTACACCGGCCACCCGCAGGCACACGTAGACTCTCTCCCACGCACTTCTCCTCCTTCCGCAGCACGTACTTCCTCCCCTTCCTCAGTTTCTCCTCCCCGGGGCCCATTCACAGGCACGCACTGTGGAGATGCCCACACCACAGCCATAGTCACACACTTAGTCACTCCCGCTCCCGGCACAAACACACACAGCCGTAGCCCACACTCCTGACACCAGAGGGTTCCTCCCCGTCTCCTGCTGCCCACCCAGCACCTCCACCCAGAAGTCTCAAGCCTTTTGGAGAGTAGCTCGTCACCTCCCCCGATCCAAATCCTTGACAGCCCTGCCCTCTTCCTTCTCCACATCTTGGTATCTGCCTTTCTCCTATGCCCTTGACCTGTCATCTCTCCTGGCCCTGGCAGCACCTCCAACCGGTCACACCCCCTCCACTCCCGGTGCTGAGCCACGTTTTTAAAATGCAAATCTGGCATTGTCACTCCCTACTTAAGCCTTCTGTGGCTTGCCGTGCCCTCGAGGTAAAGCCTGCCCTGGAGCCCAGGCTCAGCCTCGCGGGCTGCCCCTCCTCCGATCACACTGTGCTGGTCCCTCCTCCTGTTCCTTACCCATGCGGAGCCCCTATCTGGAACTCTGCCTACATTCCTTCCTCGGAGAGACCTACCTTCACCCCAGCCGTACCCTGTCCCACCCTTCAGACCCTCCATCCCAGCACCCCACTCTATTTGTCCTCCCTGCTCAATTCAGAGCTTCAAGAGGGCAGCAGTTGTATAAGTCTTGCTCCCTGCATGCGCGAGTGCCTGCCACAGTGTTTGGCACATATGTGAGCTTAGTGTGTATTTGTTGAATGAATGAATGAGAGAGGGAAGAAGGCCCCACTTAGGTGGAGGAAGCAGTCATTGTCAGGTGCAGTTTCCCTTCTGCAGGAACAAGTGCCTCATGTAGCCAGCAAACATTTGGCACCTATCCAGTGCCAGGTCCTGGAGGCCAAAGCCGAGGAGCCGTCCCCTCCCCCAGCTCTCCTTCAGAGGGATGGTTGGGGAGGAGGTGCCAAGGCTTTCGGTCTGCCCTCTCAGGGCCACCCAGGCTGGTTTTTCAGTGGGGGCTAGAGGTGCTGGGAGGTGCCCTCCCCTTCTCCCAGGAAGTTCCTGAGGGACAGGGGTCATGTGACCCCAAGTGTTTTGGGGGGACTGGCCAAGGCCTGGGGCTCTGAGGTTAAAGGACACATTCTTCAGATTCCTGAAGGGGGATGGAGGCAGCTAAAGGTGCCCCCTCCCTAAGACTGGCTTGGGTTGAGGCCTGGGGCACTGGTAGGACTGCTGAGGTGGACAGAGGAGTTGCTGTGACGTTTTCAAGCCCCGCCCCCACTTCTCAAAAACAGCCTTTGGTTACTTGGTGCCCAGGGGTGAGGTGGCCTTTCCTGGATTTGCACAGTGTGACCTGAGCGTGTGGATAACTGTGGCCAGTTGAGTGGGGGGTTGTCAGTGCCTGTGTGTGGTGGCAGGAGGGCTGCCTGATTGTCAGGGCTCAGATCCCAGAAGAAGCCTGGCTCTCAGATTCAGGGCCTGTCTCTGGGGTTCCTCGGCGGTGTGGTATTTCTGTCTGAGCCAGCTCCTGGGAACTGCTTTTCCTTCCTCCAGGACCCTAGGGAGGGGGCTGTGCTCACCCTGGGAACACTGCCATGGTCAGGATCTTGATTCCTGGGTAGCTGCTGAGGGCCCCTCCCCCCACCTCTGACTCACTGTCTGACACTTTTCTTAGATTCTCACTATGTTTCATTCCCTCTTGGCCTCTCCTTGTCTCTGGCTCAGTCTTTTTGTTTCATCTCCTGCCTCTGCCTCTTAGCCTCTGGATTCCGAGGTGGAACAGAGGAACATGAGAACCAGGGGCACTTCCCCCGCCTCTCCAGAGGAGTATCAGGGAGGAGGTAATTTCTCATTTCATTCCCGCTCTGCAGATTTGGAGGGGATTGTTCATCACTAGAACCTGCAGCATGACCGTAGCTTCCCTGTGTCTCTGTTTCCCTGTCTGTAGGCTTGGAGGTCATAACCTCCTCACCTTAAGTTCTCTTTCTGTGGCGATCCCTTAGGCAGAGCCGCAGTGCGTATCTGAGCCTGCTTTCCTGACATCTCTCTCCATCTGTTTCCTCTTGGGGGACCAGGGAGCCTCCTGGGATTGCCTACATTGGCACCTGCCTGCAGCCTGAGCTTCCCTCTCCTGCCACCAGAGCCACCCTTTTTGAGCACCATTCTTGCTTGTACCCTCTGGCACAGCTGGGGGATAGACATGTGACTCTCCTCCTGCCCCTCTTAAATTAACTGTGACAGGAGCAGGAGAAGGTCACACTGACCAGTCGCCCTCAGCAGCCTCATGTGGGTAAGATTGCCTGTGCAGTTGGGTCTATACCCGATATGCAGGGCTGGTCTGCTTACCTCTGGTATTATCAGGTGCCTTCTCTATGCCAGACTCTGTCCTAGACATGGGCACATGGGCAGCCAGAGAGAAATGCCCTCAGTGTGAGGCAGATGAGCAATGAGGCCCTTGCAGTCTGATCAGATATAGTCTGTGATAGGGAAATACCAGGGTTTTTGGGAGCTGTTTTCCTTTGGGCTGCTATAATGGAAAGTCCATAGACTGGGTTGCTTAAACAAAAGATTTATTTTTCACACTTTGGGAGGTTGTGAAGTCCAAGATCAAGGCTCTAGTCAGCCTGATGAAGTCTGCCTTCTTGGCTTGCAGATGGACACCTTCTTGCTGGGTCTGAGCTCACATGTTGGAGAGGGAGACCATCTCTTTTGTGTCACTTCTTATAAAGGTGCTAATAAGGTGTCATTCATCTCCTGATTACCCCAAGGCCCACCTCCAAATACCGTCACACTGGGGATTCAGTCTCAACATAAGAATTTTGGTAGGATACAAATATTCAGTCCATAGCAGGAGCACAGAAAGGCAGGAGGAAGGAGTGGGGGATTCAGGAAGCCCCTTGAAAGATGACTTTCTGAAAGGGAATAAGGCTGGGTTGTTCCAGCTTTGCAGAGGCCAGGAGGTGAGCAGGGACATGGCCATTACGGGAACTGCCAGTTCAGCTGGAGTAAAGAGAGCAAGGTGGGGAGAGGGAAGCAGTGGCCAGGTCAGCTTCAGCTTCTTGAATTCTGGACTTGATCCTAATGCCCCAAGGGGAGCTATAGAGTGGTTCTAGGCGTGGGAGTGGCAGGTAAATGTGTGGTTTAAGAAGGTCATTCTGGCTGCAGGATCAAGAATGGCTGGGGAAAGAGGGCAGGAGTAGAGGGACATGGGGTGGCCACTGTGGGGACAGAGACATGTTAAGGTTAGTGAACTTTTTAAATTGATAGTAACCTAAATAAAATGCGTAAGTATATAAATCTTAAGTGTCCATAAGACGAATTTTTACAATTTTAGACATTCATTTAACCACCATGCAGATCAACATAGAACTTTTACAGGTCCCCCAGCCCTTCCTACCTCCCACCCCAGAAAATTTCCCTCATGACTCTCTCCAGGGTGTCCTTCTCCCTCTCCTGGGGAACCACTGCTCTGACTTATATCATCACAGAGTAGTTCTGCCTTTTTTTTTGAACATTTGCATGTATTTCGTGTCTGCCTTCTTTCACTCAGCATGATGTCTGTGAGATGCATCTGTGTCGTGTGCATCCAGGAGCTGGAGCTCATTTTTTTTTTTTTTTTAAACAGTGTGGAATAACACATTCACTGAGCACTTATCACTAATCTAAGAACATGTGACATGTGTTGATTCTTCTAAACCCCCCAACCCTATGAGGTCTTAAGACAAAGAATTGGAGGCACAGAGAGGTTAAGGAACTTGCCCAGGATTACCCAGCCAAGTAACAGTGGAGCCAGAGTTCAAAAGCAGGCAGTCTGGTTCTGGAGCCGAAGCTCTTAACACTGCCACGTGGCCTCCATGCAAAAGCAGGCAGTCTGGTCCTGGAGCCGAAGCTCTTAACACGGCCACGTGGCCTCCATGATACCTCCTGGGTCTGTTCCTGGCTCTGTGTGGATTAAACGGATTTACATGAACTCCCAGGCATGGCGTGCCTGGATATAGATGGAGGAAGAGAGAGGAAGGAGTTGAGGATGACTGCAGGTTTCTGGCTTGAGTGACTGGGTGGGTGGTGGGGCTGTTACTAAGATAGGGAACACAGGAAGAGGAACAGATGGCATGGGGGGTGGGGAACAGACACAAGGGGTTCGATTTGGGGCCTGCAGAATTTTATGTTTCTAGGGGATGGTTGGGCGGAGATAACAAGTGGGCAGTGGGTCCTGGGGGATCTCAGGCTGGATGTGTGGTGAAGGAGGCATTCAGGGCCCTGTAGATGGCATCTGGAACTGGGGAAAGGATGGGGTCTCTTGGCAGGATGCGATGGGGACAGGATGTGTGGGTGTTGTTTGTCCATATGTGTGTTTCCGTGTTGTCTGAGCATGTGTGTACATGTGAGTATGCCTGCCTCTGGGTCATGAATCCCCCACCTCCTGGGAGAACCTGCTGGTCAGCTGGGAGCTGGGTTGTTTTTGTTTGTGGTTTGACCCTGGGAGGGGGGTGCCAAGCCTGAGAAACTACCCACGGAGAAGCCCCCGGAAACATCTGTGAGTCTTCCCCCAGGCCCAGGGTGGGGGATTGGCTGGGGAGGGAGATTTTCTTGCTTCTCTCACGCTTGCCTAGGGGAGGCTGTCCCTGGGGTAAACATTATCCAGTTAGTAAGGTTGACAGCAAACTCTACAGGATTCGGGGACTTTGTAGGCGGCTGGGAAGAGGGCAAAGGAGTGTTTGGAAAGGACACCTGAGTAGAGGAGACCAAGACAGCCTTCTGGTTGGTTTTTCCTGTTCTCTCTCATTTCCTGTGATGGCAGTGGGGGAAGGGTTCCCCAGCACTGGGGCCTCGGCCTCAGCTTCAACTTCCTTTCCCTTTCCCCCTGGTGACCTCCCCGAAGGCCCAGCTGGAGCAACAGACACAAGGTAGCTGTACTCAGCCTTTGGGATTGAGTCCTCTGGGGCTTGCCAAACCTTGGGAAGGACCCTTATTTGCTGAAGCATTCCAGGGAATGAGCCCCAAGTCTCTTCTGCTTGGATAAGGCCAGCCAGCTGTGGGAGTCTCTGGTTATGCTTCTGCTGAGGGCTGAGACTCTCACTTGGGAGACAGTGTTGTGTTGTGGGGTGCTCCATGTCACGAAGCCACAGACAGGAGAGACTTTGGACATTAGGATCAAATGAGATGTTAAAGAGACAGCCTTAGTGGCTGTGGTCACACAGGCCTGGAGGCAGGAGACTTCTTGACAGTGGAGCGGGGGTTTCTAAGGGAAAGTCTGAGAAGCTCCCACACCGGGAGGGGAAGGGCTCAGAAACTACTCCGTCTAGGAATGGAGGCCAACGTCAAAGCCAGCCTGTTCCCCAGAGTGCCTGGCTAGCCTGGAGCAAGGGCCCGCAGCCCTGCCTGTGTGCAGAGTGGCGTGCCTGTTTGGATGTGCTGGAGGAGGAGGAGGAGGAAGCAGAGCCACCATACCAGGGCCGTGCGGGCTGTGCGGGCTGTAGGGCGTACACACACACACATACACACACACACACACACACACACAGGCACACAGATGCAAGCTGTGTGAATCACCCAGCCTGTGAGTCAGCGCCAGGATTCCTGTCGGGGAATGAGTGAGACCAGGCTGAGGTCTGTCAGTCCATCTGTTGGTCTGTCTGCCTCCTTCCCCTGCTGGTGTGGATGCATGTGTGTGTGTGTGTGTGTGTGTTTTGTGTATGTATGTAAGTGTGTGTTGTAGGAGGTAGTGGGGAAGGTGCCTGGTGCCTGGGAAGGCTTTGGGCAGAGGTGGGAGTTTGAAGCATCAGGCTGTGGATTTGCACATTAGTTTGGAGGGAGGGAGGTGCTGTGTCTTGTGCAGAGATCCTCCTGGAGACTGTGCCCTCCCCCACACAGAGCTCCACAGGCAGGGCTGGAGGGCAGAGGCCAGGGTCTGGGATGCCTTGGAGGGTAAGTGGGAGGGATGATGATCCTGGCTGGAAGTCCACCTGCTGCTGCCTGCCTGCCACTTAGAGCCTTCTCATTCCTATTCCAG
Seq C2 exon
GCTGTCTGTCCCCAGACCCCAGAGCACGTCCGGCACCACCATGACTGGGCTGTTGAAGAGGAAATTTGACCAGCTGGATGAGGACAACTCCTCGGTCTCCTCCTCCTCCTCTTCCTCTGGGTGCCAGTCTCGCTCCTGCTCCCCAAGCTCTTCTGTCTCCCGTGCCTGGGACTCAGAGGAGGAAGGCCCCTGGGATCAGATGCCCCTGCCTGACCGTGACTTCTGCGGCCCCAGAAGTTTCACCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144655-CSRNP1:NM_033027:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.723 A=NA C2=0.290
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)