MmuINT1007850 @ mm10
Intron Retention
Gene
ENSMUSG00000032515 | Csrnp1
Description
cysteine-serine-rich nuclear protein 1 [Source:MGI Symbol;Acc:MGI:2387989]
Coordinates
chr9:119977002-119984443:-
Coord C1 exon
chr9:119984406-119984443
Coord A exon
chr9:119977246-119984405
Coord C2 exon
chr9:119977002-119977245
Length
7160 bp
Sequences
Splice sites
5' ss Seq
GCTGTAAGT
5' ss Score
8.56
3' ss Seq
TTCCATTATCTTCATCCCAGGCG
3' ss Score
6.9
Exon sequences
Seq C1 exon
GAAGGTCTTGGCGGGAGCAGAGGAGGCAGCAATCCGCT
Seq A exon
GTAAGTAGCCAGGGTCCGGCCTAGGAGAAACCAGATTCTTTTTTTTTTTTTTTTTAAGGAGGGATGGGGGTGGGGAAGCTGGTTCCAGCAATCTCTACTTTAGGTATTGTTCGGAGTAAGGGCTCTGGCCCGAGGGCAGAGGTGAAGGCCAGGCCCTAGGATGACCTTTTCTTCTCTCCTCATCCCTGGCTGGTCTCCAGTCTGAGCTAACTTTCTGCGGGATCTGGGAAAAAGAGGTGGGGTGAGGGCCGGGGAAGGGTCCTCAGATTGAATTGATAATAATCTGCCCTGGGCGGGTGGAGGCAGGGGAGGAGCTTCCATCGCTCGCAGCCTCAGTCTACCCAGTCTGCAGCTCGGGACTGCTCGGCGTGGAGAAGCGGGCATCTCTAGGACCCGGCTCTGCACGAAGCTCGGCTCCGCGATCTTAGGAGCCGAGCGCGGAGCAGCGGCGTCGCGGCCCGGTCACAGTCCGCGGGGAGGCTCGAGGCGGGGGAGGGGGCGGTGCCTCCGGGGCGGGGCCGAAGGCTGCGGGCTGCGGGGCGGCCTGGCGGGAGGCCCGGCGTGCGTCAGCGCCGTGAGCCCCGGAGTTTTCCACTGACGAGGAGGGCGGAGCCGCGGGCGGGGCCGGGGCTGAGCCAGTCTCTCCCGCCGCCGCCGGACGCGCAGACCTGGGCCGGCTGCACCGACGGCCGCCCGGCCGAGCGCACTGCGGGTCGCTGTGTGCGCTGCGACCCTGGGGCCGGCACACGAGTGGCTTCGGTGAACTGGGCGAGCCCTGCTAGCTTAGGTGAGTGCCACGGTTCCTGAACGCGGCGGGATGGGAAATGGGGCAGGGGGCGTCTCGGGTGAGTGGCGCTGTCACTCCAGCTCCCCGCTGATCTCCCTTGGGTCCTCCGGAGGGGACGCCGGGATCCGGCCTCCGAGCCCGACTGGAGATCTGGCGCCTGGAGTGAGAGCCCACGGCTGCGAGGTGGCGGGGGGGGGGCAGGCTTCCCCTCCCCCGCCTCGTTGTGGTTACCCCAGATGTCCAGGCGCCCCAAAGCCGGGCGCAGGTGGCAGTGGGACGGGGCGCGCGTGCCCGCGGGTGAGTTTCCTTTTGACCTAGTTGCCTGAGAACTTTTCAGAAGTTACTCGCGTGGCCGGGGCAGGTGACATTGGTCGTCTTCCTCCTCGGGCTCCCTAGGGGGAGGGTGCCCGAGCTGCGGCGTGTGCCGGGCGCCCTCGGCAGGCGGGGGTCAGGGAGGGTTTGGAGGGATGAGTGAGGAATGAGCGAGGCTTGGTGAGTCACGGACCCCGGGAGGGAGGCGGGGGGGAGAAGGATTGTGTCGTATGTTCACCTGTCACCGTCACACTCAGAGGCCACTGCCGTGAGTCACCGGGGCGCAGCTACACCGACCACCCGCGGGCACACGTAGGCTCTCTCCCACGCACCTCTACTCCCTCTTCTGCATGCATTTCCTCTCCTTCCTCAGTTTCCCCTTCCCGGAGGTCCTTTCGCCTTCATGTACTGTAGAAAAGCCTACACCACAGCAACGGCCACACACTTAGTCACTCGGGTTGCCGATACAGTCACTCCCAGATGTAGCCCACCTTCCTGACAACAGAGAATTCCTCCCTCCTCTCTAGCTACCCACCCAACATCTCTGGACCGAAGTCTCAGCCTTCTGCAGAGAGTAAGTCAATACTCTCTGCCCCCAAATCTTTGACAGCCCCGCCCACATCTCCCGAGCTGTCACCAAATCCACCCCCTTTTCTCCTTTGCGCTTGTCCTGTCAGTTCACCTGGCCCTACCCTGTGTCCTACGGGTCACACCCTCTCTGGCTCAGGCGCTGAGCCATCTTTCAACCATGCAAATCTAGAATTGTCAGTCCTTACTTACGCACTTGGGTGGCTTCCTGTGCCCTCGGGCTAACACAGGCCCTCTTAGTTGCATCGCCACCAGAAGGCGCACTGGCTGTCCTTGCTCCAGTCCCTGTACCATGCAGTGTGACCCCCCCCCCCCAATCTGGAACTCTGCCAACATCCCTCCTTCAGAGGAGCCTGCCTCGTCCCCAGTTCTACCCTTCTTGCCTATCCTGTATAACTCCTACTTGAGAGGTGTTAGTTGTAGGTGCTTTACCTGTGTGCCCAATGCCTGTCATAGTGTTTGGCCTTTAGGAAGCTTAGCCAGGATTAGATTGATGAATGAATGAATGAATGTGAAAAACTGGCTTAAGGTGGAGGAAGGGGTGACTGTCAAGTGCAGTTTTCCCTGGGTAGAACTGAGTATTTTATACAGCCAGCAAACATTTGGCATTTACCCAGGGCAGGGCCCTGGAGTCTGAATCGAAGGAACTGTCCCCTCCCCCCATCACTTTCTGAGGCATGGGTGGGGGAGGGGTACGTCAGTGCTTCCTGTCTGCTGTGTCTTGAGCTGCCCAGCACTTTGTCTCCGTGAACTGCTTGTAGGTGATTTTCCGCATCCCAGGAAGCCCTTCAGGAGGGTCTGGGGTCCTGTGACCCTAGGTGTTGGAGGTGGGGGCATGACTGATCAAGACCTGGGGTTCTGAGGTCAAAGGACACATTCTTCAGATTCCTGGAAGGGGGAATCAAGGCCGCCAAGGGGCTGGGGACTGGAGCACACTGGCGGGCTGAGGCTTCCAATAGCTGCCGCTTGTTGCCTGGGTGGAATAGCCTTCGCTGGTTCAGTGTATTAAATAGCTATGGTCACTAGACTGGGGTGACATTCCGTTCTCTGGGCTGTCAGCGCCTGTGTGTGGTGGCAGGAAGGGGGCGGCCCCAGATTCTGCTACCATCCCGGAAGGAGCCCGGTTCTCTTTGATTCCGGGGCCTGCCTCTGGGGCTCCTCAGGGGGTGTGGTGTTTCTGTCTGAGCCAGCTCCTGGGAATGGCTTTTCCTTCCTCCAGGACCCTAGGACAGGACTGTGTTCACCCTGGGAACAGGATCTTGAGTCCTGAGTAGCTGCTGCAGCCCTACCCCCACCCCCTGACTCACTGTCTGGCACTTTTCTTGGGCTCTTCAGCTATCTTTCATTCCGTTTTCTGACTTGGCCTCCTCTGCTGCACAGTCTTTCTGTCTCTGCCTTCTTTCAGCCTCTGGATCCCAGGTGGCACTCCTCCCTCCCTTCTTCCCTCCCTTCCTCCCTCTCTCTCCTCAGACCCAGCCAGGGCTCCAGCACTCACGCCTCAAACAGCCTGGCCTTTCCAGAACTCTGCCTGAAGCTTTGAATGTTAACGCTCTTCAGCCTTAGTTCTTATCTTGGGTACACTCAGCTGTGGATCTCTATCCAGTCCACACCTACCTCTCTGACATCTGTTTACTCTTAGGGACCCGGAGCCTCTGAGATGCCACCTCACACTTGCACTCGAGTGAGCCTGTCCCTGTCTCCTTCCCCTTCCCCCCCTACCCCGTCCTCAAAGCCACCTTTGAACACTGTTCTTGGCTCAGCCAGCTCTGACCCTGGCTGGGGGATGGGCATGTGTCTCCTCATTAGATTAGCTTTCAGGGCCAGGAAAACTAAGACCCCTGCCTGGGCTAAAGCACTGCCTGTGTCACAGTCCTGCTGCCCACTCTTCTGGGCCTCTCTCTGCCAGGCTTATTATGGCTATGCAAAAATAGCCTATAGCCAAGCCTTGTGTGAGGAGAGGCCCGTTACACTGTGGTCACTTATAGCTCTTAAAGAGTTGAACCCAGGGTTTCAATGTGTGCCAGACAGCTGACCTATGTCCCTGGCACATATGGAGGCAAATGTCTGCCATCCCAGCACGTGGGAAGTGAACGAACACTGGAGGATCAGGATAGAGGCCATCAAGGGCTACTCAGACTCTCTCAATCAAGATCTATTATTTCCTAAAGCACTTGCCTCCAAGGTCATGACATCGGAGATTAATCTTTGATTTGGGACTTTTTTTTTTTTTTTTTTTTTTTTTTTAGAAAGTGTTCTGTTCATAGCAGTATCCCCAAAAGGCAGAAGAAAGTGTGTGTGGGAGGGTGGGGGGGCTTTTGATGTCCTTTTGGAAATAACTTTTTGGAGAAGAAGGTTTTTCTCTGTAAATCAGGTTGGCTTAAACTCCAGGCAATTCTCCTGCCTCATTTGAGATTGGATAAACATGAGCTATGATACTCAACTCAGAAATGACTTCTGGAAGGGTGTAAGTCTTGGTGGGCTGTTCCAGTCTTTGAAGAAGGTAGGGAGGATAGCAGGGACATGGCCTTGTGGGGAACTGCAAACAGTGGTGCTCAGCATGGGAACTGCAAACAGTGGTGCTCAACATGGGGACTGTAAACAGTGGCACTCAGCATGGGGACTGTAAACAGTGGTGCTCATGTGCAAACAATGGAGCTCAGCATGGGGACTGCAGACAGTGGTGCTCAACATGGGGACTGTAAACAGTGGCTGGCGTTCAGCATGGTGTTTTCTTTCTGTCATTTGGCTGTGGGGTATAGGGTGGCTCAGAAGAGACTAGATGGTAGCAGGTGGGGGCAGACACAGAACAGGTGATAAGCTCCGTGTGTGTGCTGAGAAGCCACCTCAGGGCTTTGCAGGAGCCCTTCAGGGAGCTCCACCATCAGGTGACCTACATAGAACAGGAATACAGTCTAGGAATGCCACTCCTGCAGTGGAGGAATTGTGAAGCATTTAACACCCCTGCAAACCTACCCAGGCCAACCTCTACCCATCATCCTACCCCCACCCCCACCCCCAGGAAATCCCCTCACAACTGTCCCCTGGTCCCACATACCCCCTCCTGGGAGATTGTCCTGTCCTTTCACCTGACTGTGGAGAAGGCAGGTACAATGCCTTCTAATTGGGTCTCCCCTTTTGTCAATCTCCCATTTGCATTTTCTGTCGAGTTCATGCCTGTGTCTCCACTCAGGAGTCCTCGGGCTTACTATCATTTACACACTTACTGAGCACACGATTCACTGACTGAGGACTTGACATGTGTCCATTCCTGTATTCCACCCAGCCATGTGAGGTTCTAATGTGTGTTTATTTCCTTCGAGACGCCGTCTCCCTTAGCGGAGGCTGATCTTGAACTCTTGATTCTCCTGTACCTCCAGAGTACTAGGATAGATATCAAGTGTGCACCACCCTGGCTTGCCTTCTGGGACCTTCAGACAATTGGAGACAGTGATGTTGAGGGACCTACCCAGGATCACCCAGCCAATAACCAAGGCAAGGTCCAAATCAGGCAGTTGATTTTGGCCTCTAGGATATGTCCCAAGTCGGTGCCTAGCCTGTAGGTGAACTTCCAGGACTGAGACTGCCTGGGTGTGGGTGCAAGAAGAGGGGAGGGAGAAGCTGAGGGTGGCTGCAGGCTGCAGGTTTCTGGCTTGAGCAACTGGGTGGGTGGCTGCAGTTACTAAGACAGGGAACACAGGAAGAGGAACAGATGGCATGGGGAGGGAGCAGAGAGGTTCAATTTGGGGCCTGTGAAATTGTGTATTTCCAGGAGAAGTGGGTCCTTGCTTGGTTTGGGGGTCTTGGACTTGTGCCCTTAGTCTCACAGGAAACAACTGGAATTAGAGAGGGAGGTAGTTCCCCCCCTCCCTGTGCATTAGGCTGTGGTGGTCGCAGGATGTTTAGGGGGCTACCTGTCAACCTGTGTGTATGAATGAGTGTGTCTGTGTAAGGATGCGTGTGCCCGTGTGTGTGATGCCTGGCTCATGGCCAAACACCCTCATCTCCTGGGAGAGTCTACAGACAGGTTAACTGGGCTGTTTGTGTTTGTGGTTTGACTCTGGGAAGCCGGGTAACCTAGCCTGAGAAACTGCCCCGGAAACACCTGCGTGTCCTTCTTCCCCCGGGCCTGGGGTGAGGGCTTGACCTGGTAGTAAGATTTTCTTGAGCCTCTCCCATGCCTGCCTGGAGGAGATAGATGGCTGTTCTCCATTGAGTACTTTTATCCAGTGAGTTGACAGCTGGCGCCCTCCGATTTAGGGACCTGCTGGGAGGTATAGGTTAGGAGAAGGGACCACAGGATACCTTGGTGAAGGAGACCCAGACAGCTTTCTGCTTAGTTTTCCTGCCTCTTTCACTTCCTGTGATGGTGGTGGGGGAGGAGTCCCCAGCTGTGGGCATTCAACCCTGAATGAGTGAGTAAGGCAGACTCAAGACAGCGACACAGCAGGTAGCTGCACTCAGCCACCATCCTTGAACCCACTGAGGGTCTCCAGGTCCTGGAAGGACTGTTACTTGTCTGAGCACTGGGGGGTTAGGAAAGGAGCTTTAACCCCCTCCAGCCTGACTGGTGAGTGAGTGCATCTTACCTAGGTCCAGAGAAGCTACAAAGGAGCAAGGGAAACGGGAGAGCAGCTTTTCCTGATCAGTTTCACTATTAGAGGTTTGTTTTGTTTTAAGGAGAGTTAACCATAATGGTGAGCTATTGAAGGTGAATTTAAGATCAAAGTGAAGTCTCCTGCCACAGTCCAGCCTAGAGCAGGGGACTTTTCTCCTGTGGCATGGGGGTTTCTGAGGGAAAGTCTAAGCTCCATCCCAGGGAGGGGAGGGGCTTGGGAAAGTCCTTCTGCTGGGAATCCAGCCAACATCAAAACCAGTGCCCATTCTCAGAGCTCCTGTTCAGCCTGGCCCAGGAGCTGACCTGAAGCTGTCAGTGGGCAAGGCGGTGGACCTGTGTGGTGGGAGAGGAGCGCCGCTCTGGGGGGGGGGGGGTCGTCTGGAGATTGTAGAAGGCCCTGCACAGGCAAGTGCACAAAGACCCGAGTGCCTGTGAGTCAGCCTCCAGGATTCCTGTGAAGATGAGCCAGGCTAGTTCTGTCAGTCCATCTGTTGGTCTGTCTGCCTGCTGGCCTGTGTGTGTGTCTGGTGTATGAATGTGTGTAGGTGTGTGCATGTATGAATGTGTAGGTGGCAATGGGGAAGGTACCTGGCTGTTTTCCAGAGAAGGCTTGTTATCAGGGGCCAGGTCTTGGGAGGCCAAAGTGTCTGGAACTTGGATTTGCGTGTTAAGACTCATTTGAGGGAGGAGATACTACTGTGTTGATTGGGGCTGGGGACCCTACTGGAGACACTACCATGAACCTGCTCTGGCTGGGCTGGAGGGCTCAGAGTCTGGGAGATACCATGGAAGGTATGCAGGGGAAACATGGCTAGGCAGGGAGCCTATCTCTTAATCGTTCCATTATCTTCATCCCAG
Seq C2 exon
GCGTCTGTCCTCGGCTGTTGGAACCCCCTACATTCCACCATGACTGGGCTACTGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTCCAGTTCCTCCTCCTCCTCATCGTTCTCTAGCCGGCTCTCTCTCTCCTCCTTCCCCGCCTCTTCTGCCTCCCCTGCCTGGAACTCTGATGAGGAGGGACCAGGTGGTCAGGCACCCCAGTCTGATCAGGACTCCTGTGGCCTCCAGAGTTTCACTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032515:ENSMUST00000035101:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.664
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types