RnoINT0042830 @ rn6
Intron Retention
Gene
ENSRNOG00000033433 | Csrnp1
Description
cysteine and serine rich nuclear protein 1 [Source:RGD Symbol;Acc:1305999]
Coordinates
chr8:128665610-128665988:-
Coord C1 exon
chr8:128665919-128665988
Coord A exon
chr8:128665846-128665918
Coord C2 exon
chr8:128665610-128665845
Length
73 bp
Sequences
Splice sites
5' ss Seq
AAGGTAAGT
5' ss Score
11
3' ss Seq
TTCCATCCTCTTCATTCCAGGCC
3' ss Score
9.14
Exon sequences
Seq C1 exon
GGAGACTGTACTGGAGACACTACCATGAACCCGGGCTGGAGGGTTCAGAGTCTGGGAGATACCCTGGAAG
Seq A exon
GTAAGTTGCGGGTGGAGAAAACATGGCTAGGCTGGGAGCCTACCACGGAACAGTTCCATCCTCTTCATTCCAG
Seq C2 exon
GCCGTCTGTCCTCAGCTGCTTGGAACCCCTACATCCCACCATGGCTGGGATACAGAAGAGGAAGTTTGACCAGCTGGAAGAGGACGACTGCAGCTCCTCCTCCTTGTCCTCTGGCGATCTCTCTCCCTCTCCTCCCAGCTCTTCTGCCTCCCCTGCCTGGACCTCTGAGGAGGAGGGACTGGGTGATCAGCCACCCCAGCCTGATCAGGACTCCAGTGGCATCCAGAGTTTAATGC
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000033433:ENSRNOT00000050543:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.985
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGGGTTCAGAGTCTGGGAG
R:
GAGGAGAGGGAGAGAGATCGC
Band lengths:
167-240
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]