MmuINT0044831 @ mm10
Intron Retention
Gene
ENSMUSG00000003053 | Cyp2c29
Description
cytochrome P450, family 2, subfamily c, polypeptide 29 [Source:MGI Symbol;Acc:MGI:103238]
Coordinates
chr19:39290729-39291206:+
Coord C1 exon
chr19:39290729-39290891
Coord A exon
chr19:39290892-39291056
Coord C2 exon
chr19:39291057-39291206
Length
165 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GTACCTTCTCATTTCTTTAGGCG
3' ss Score
9.11
Exon sequences
Seq C1 exon
TTCTCAAAAGCTTATGGCCCTGTGTTCACTCTGTATTTGGGCTCAAAGCCTACTGTCATATTGCATGGGTATGAAGCAGTGAAGGAAGCTCTGATTGATCGTGGGGAGGAGTTTGCTGGTAGAGGAAGCTTTCCAATGGCTGAAAAAATTATTAAAGGTTTTG
Seq A exon
GTAAGTATGTGTACATATTCATGTGTGTCTTGCACAGTGTTTACAGTGAGATATAAGATTGAAAGAAAGGGATGGGCTTCCTTCGTAGGGACAATGGGGCCACTCTATTGTTTCCACACTCACCTGTTCTTAGCATCTATTTCTAGTACCTTCTCATTTCTTTAG
Seq C2 exon
GCGTTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTTACACTCATGACCCTGCGAAATTTGGGCATGGGGAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGTCTTGTGGAAGAACTGAGGAAAACCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003053:ENSMUST00000003137:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTTATGGCCCTGTGTTCACT
R:
ATGTTCCTTTTCCCCATGCCC
Band lengths:
245-410
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types