RnoINT0044335 @ rn6
Intron Retention
Gene
ENSRNOG00000021405 | Cyp2c7
Description
cytochrome P450, family 2, subfamily c, polypeptide 7 [Source:RGD Symbol;Acc:620379]
Coordinates
chr1:148107439-148107916:-
Coord C1 exon
chr1:148107754-148107916
Coord A exon
chr1:148107589-148107753
Coord C2 exon
chr1:148107439-148107588
Length
165 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAGT
5' ss Score
10.47
3' ss Seq
GTATCTTCTCATTTCTTTAGGCA
3' ss Score
9.42
Exon sequences
Seq C1 exon
TTTTCAAAAACCTATGGCCCTGTGTTCACTCTGTATTTGGGCTCACAGCCCACTGTCATATTGCATGGATATGAAGCAATAAAGGAAGCTCTGATTGATAACGGGGAGAAGTTTTCTGGTAGAGGAAGCTATCCAATGATTGAAAATGTTACTAAAGGTTTTG
Seq A exon
GTAAGTAAGTGTACATATTCATGTGTGTGTTGTATCATGTTTATATTAAGATATAAGTTTGAAAGAAAGGGGTGGACTTCCTTCTTAAGCACAGTAGGACGTCTCTATGGCTTCCATTTTCATCTGTTCCTAGCATCTATTTCTAGTATCTTCTCATTTCTTTAG
Seq C2 exon
GCATTGTTTTTAGCAATGGAAACAGATGGAAAGAGATGAGACGATTCACAATCATGACCTTTCGGAATTTGGGAATTGGAAAAAGGAACATTGAGGACCGTGTTCAAGAGGAAGCACAGTGCCTAGTGGAAGAACTGAGGAAAACAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000021405:ENSRNOT00000040325:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.015
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(10.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCACTGTCATATTGCATGGA
R:
TCTTCCACTAGGCACTGTGCT
Band lengths:
249-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]