DreINT0054282 @ danRer10
Intron Retention
Gene
ENSDARG00000022631 | cyp2p9
Description
cytochrome P450, family 2, subfamily P, polypeptide 9 [Source:ZFIN;Acc:ZDB-GENE-040120-2]
Coordinates
chr20:25682959-25683367:+
Coord C1 exon
chr20:25682959-25683121
Coord A exon
chr20:25683122-25683217
Coord C2 exon
chr20:25683218-25683367
Length
96 bp
Sequences
Splice sites
5' ss Seq
AAGGTCAGT
5' ss Score
8.68
3' ss Seq
AAGGTCTGCTTCATAAACAGGTA
3' ss Score
6.63
Exon sequences
Seq C1 exon
TTTGCAGAAAGATATGGCAATATTTTCAGCCTAAGACTTTTTGGACCAAGAATTGTGGTGTTGAACGGGTATAACTTGGTGAAAGAGGTGTATATAAAACAAGGAGACAACCTCGCTGATCGACCAGTGTTACCACTATTTTATGAAATTATTGGAGACAAAG
Seq A exon
GTCAGTCTAATGCCAGAATGTTCAAGTGGTGATTTAACAATTCAACAACAAAAAAATTAATTATCAATTAACTGTGAAGGTCTGCTTCATAAACAG
Seq C2 exon
GTATAGTTCTGTCCAGCGGATATAAATGGAAGCATCAGAGGAGATTTGCACTCTCGACTCTTCGAAATTTCGGATTGGGGAAGAAAAGCCTGGAGCCATCTATCAATCTCGAATGTGGCTTTCTGAATGAGGCCATCTCAAATGAACAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000022631:ENSDART00000030229:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.8=100)
A:
NA
C2:
PF0006717=p450=FE(11.0=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTGATCGACCAGTGTTACCA
R:
GGCCTCATTCAGAAAGCCACA
Band lengths:
183-279
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]