MmuINT0044835 @ mm10
Intron Retention
Gene
ENSMUSG00000003053 | Cyp2c29
Description
cytochrome P450, family 2, subfamily c, polypeptide 29 [Source:MGI Symbol;Acc:MGI:103238]
Coordinates
chr19:39321551-39325093:+
Coord C1 exon
chr19:39321551-39321692
Coord A exon
chr19:39321693-39324905
Coord C2 exon
chr19:39324906-39325093
Length
3213 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
TTTTTATTGTGACCAACCAGCTA
3' ss Score
4.57
Exon sequences
Seq C1 exon
GTAAACCACATTGAACAATCAGAGTTTTCACTTGAAAATCTGGCAAGCACTATCAATGACCTCTTTGGTGCAGGGACAGAGACCACAAGCACAACACTGAGATATGCTCTCCTACTCCTGCTGAAGTACCCAGATGTCACAG
Seq A exon
GTGAGGACACAGTTGGTGGATCACAATGGTCCTGTAAGTTGCTGGAAAGGTGATACCAGTTTGGTGCATGTTGTTATTCTTAAAACAGTCTCAGACCTTCACCTTCTCTGCTACTGACTGTAATGAACAGTATGATTGAGATAAATGGACTCTGGCTGTAGTAAAAGCAATCAAATGCTGGTCAGTGCCTGGGTTTCCTATGAGGAATACGTTGGCAAGTATGGCCAGCATATATTGCCCTGTGGATACATTACCCTTTCATTCTTAAAAGTTTCTTAAAAATCTGTAGATCAGCTAAAATCTTATGGTCTCCAGTCCTTATTTTGATGAATCTAACTTTAGGGTGGAGAAAAGGAAACTTATCTCACTGAAGCATAAGTAGAAATCCTAGAATTTACTATGATTGAGAAAATGTACACACTGAGACATATTCAAAATATTTAGATTATCTAGCCATGTTCCCATTCATGCAGAAAATGTAGATAAATAATTGCATCACACTATAAGTCCATTTCCTTAACCTTCTGTTGGATAATGATTTTTTTCAACTCTACCAATAATATTTTCTTTTACAGGGTACTTTAAAAGAGATCCAGAATCTCAGCATAAATGAAACCTGCATTCACTTCTGTGCCCATTATATCCTACACAAAATAGCACAAATGTGATCAGAATTAATATTTTTAATATATGAGGAGATAACATTAAGGCCTCTTAAATTTATTAAAGCAAGGTATAATGTTCAAGAAAAAAGAACAGAAAAGATTATACTGAAACTTAAATATTAGATGAACATACATGCATCAAAAAAACAGGTTATGGATCTATATTTATGGATCAGTAAAGACTACTGTTCAACAGTAATAAAAGTTTAAGTAGAGAACAGAGTTCTATATAGCATGCTTATTTTGCTGATGTTTCCTCTCTACTCCCATTCATCAGAGGACTTACTTTCCAGATAAACTGAATTTTTAAACAAGGGTGTGGTGTTGACTAAGAATCCTTCTACCTGGGATATCAATGTTTAACAGGAAAGGAACAATGAATAGATATGAAAGGGGAGACTGTCAACATTTGATTCCTGTATTCTCCTCTGTGACCCTTCTTTGCTTTGTTCCATGAATGTAAGCATTAGGGTCAATACTCCAGACACACAGATTTAATAGTGCACCATATTTTACTACCTTAATAAAAAATACTTTCCAAATATTCATCAGAATGGAGAAAACATCCACCAAAGACATAGACTCATAGGTTCATGAATCTTCTCCTTATGTAGGCTCATGAAATGAAGTGTGAAACCCTTCAGGGAGATCACTGAGTCACATGTAAACTATTCTCATTGAGACTATACCAGAATTCTCAAGAGCAACCGATTTCTGATAAGTTTATAAGTTATAATACAGTTCAGATCTCCATGATTGCTTCCTCCCACTGCCAGTTCTTCATGAATCTGTGAGATGTTTTCACCCTATTATCTAAAGCAACATCACAACAAGTTATGGAATCCAGGAGTCTGAATAACTCATGAGAGAGAATAAGGTTATCAGAGAGGTTCCTGGGTCCCAGGTCTTGGAAGCCCCAAATTCAGTATTTAAATTATTGGTGCTGCAGGTGTGAATGAAAAAGGAAAGATGAAAGACAAACATTCTGTTGCCTAAAGCTCCCATTACTTGAGTGTAATTCCCAGCATCTTAAAACATCTTCCTCAATATTGCTTATAATTCTAACTCAAAAAGTGTAAAATTACAAACAAATAAAAATATATCCATTTATCAAAATGTGCTAATGGAAGGTAGTCATAATTTATTTTCATGACAATAAATAATATTTATTGACATGAATATTGTTTTGTGATTATATTTAATCTAACAATGAATTTTGGTATAACAAAGTATTATAATCCAATCTGCTGTTTTTTTCTTTTATTGAAAATTATTTTTTTCTCACAAGATTATGGTTTCTTCTCCTACTCTCTCCTATTCCTCCTTACCTCCCTCAACATACAGATCTACTTCCTTTCTGCCTCTCACTAGAAAACAAACAGGCTTCTAAGGAATAATGGTAATAACATAAAATACACTCAAATAAAATATAATAAGATACCAATGGAAAGTAAAGCATCAGAATTAGTCAAAATAAACAAAAAGAGCCCAACTGAAGGCCCAAGAAGAAGAGATCCATTCACTTTCACACCAAGGAGTCCCATAAGAACACTACACATTATAAAACATATTCAAAGGACTTAGTATAGACCTGTGTGTACTGTGTCACTCTGTATGAGTTCATATGTCTTTTGAGTATATGGATTTCATAGAGTTTTGTTTTCTTGGTGTTCTCTATTGCCTCTTAACAGAGCAACAACAACAAATAAAACTGTCTCTAAGGGTATAAAAAGGAGTTAAGAGAAGATATAAGTCACTGAAATTTGTCCTTGCTTCAAGCATTCTTTCTGTGTGTGTTTGATTTCCCTAACTGCTATACACCCTGTAGATATCTGGATCCACACACATCAGTTGCTGCCAACACTGACCCCCTCATTGGCTGGCCCTCTCAGTTTACCCTCTGTTGTCAAATCTGGTGTTTGGCAAGACAAAGACAGAGACAGAAAGACAGGGATAGAGACAGAGAGGCAAGACAGAGAGAGACAGAGACAGAGTGAGGCAGAGACAAATACAGACAGATAGACAGACAGACAGACACAGAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGATTTGGAGTGGCAGGATGGTCCTTTTATCTGAAACATACACCTGGGGCCCCTGGAGATGGCAGGTGCTGACATAGTAGTTGCTAGGTCTTTGAGAGAAGGGCAGATGGGATGGGTCTTGATTTTAAAACCTAACACTAATGACCTTAACCAAGGACTAAAATACATTGACTAATTATACAGTTTTATTTAATTTTTAATTACTTATACTGTATTTGCTGTTATGGCTACTAAGTAATAAGTATATGGTAATCCATTATAATATCTATGTAGAAGGAATGTGATTTAACCCATAACACATCATTTCTTTATAAATATGTGTATATATACTTTTATGCAAGAATTTAAAATTCAATTTATAATTTTTTTGGAATACCTGTATTGAGCTGTGTATGGCCTGACATTATGACAAGTATGTCATTTCCCCCCCCCCCCCCCGTTTTTTCCCACTTTTTATTGTGACCAACCAG
Seq C2 exon
CTAAAGTCCAGGAAGAGATTGACCGTGTGGTTGGCAGGCACCGCAGCCCCTGCATGCAAGACAGGAGCCACATGCCCTATACAGACGCCATGATTCATGAGGTCCAGAGATTCATCGACCTCCTCCCCACTAGCCTGCCTCATGCAGTGACCTGTGACATTAAATTCAGGAAATACCTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003053:ENSMUST00000003137:6
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.048
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types