MmuINT0044879 @ mm9
Intron Retention
Gene
ENSMUSG00000054827 | Cyp2c50
Description
cytochrome P450, family 2, subfamily c, polypeptide 50 [Source:MGI Symbol;Acc:MGI:2147497]
Coordinates
chr19:40171207-40172632:+
Coord C1 exon
chr19:40171207-40171348
Coord A exon
chr19:40171349-40172444
Coord C2 exon
chr19:40172445-40172632
Length
1096 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTTCACTGTGACCAATTAGCTA
3' ss Score
3.31
Exon sequences
Seq C1 exon
GAAAACGGCAACTATCCATTGAAAAATAGGCTTGAACACCTGGCAATAACAGTGACTGATCTTTTTTCTGCTGGGACAGAGACAACAAGCACAACACTGAGATATGCTCTCCTACTCCTGTTGAAGTACCCACATGTCACAG
Seq A exon
GTGAGGATAATACAGGTATTGAACTACTGTGCTCTTGTAAGATGCTGATAAGATGATGACTAGCCACCTGCATGATGTCATTTAACATCTCAGTATTTCATTTTTTGTTCTGCTATCTGTAATGAGGAGGGTGATTAAGAAATGTAGAGACTATGAGTTCTCAGTTCCCAGGCAGGTGGTAGGCACCATACAAAACAAATAGGTTTTACTTGAATCTTGTCACTATTGCATAATGAGAAAATAGTTTCAAACTACACATGCATGCACATAAATTAAAAATAAATATTGAATTTTAACAGATATCTGATTCCAAATGTCTTTCATAATGACCATCATAACAGATAACTATACTTAAATTTATTGTTTAAAATATTTGATTACTTATATTTTATTATGACTCTAAATAATAAATATATTCTAATGAGTAATAATCCTAATTATATAGGACAGCATCATAAATCTATGTCATAGCAGTTCTATACACCTGAATTTATTCTTGATCATGAAAAAAATGTTTATAATTAAGCTGAGGCATAGACTCCATGCCCTGGATAACCTTGCATTATTGTAACAAACATGTCACATATCCCAGAGCCCATTTTAAATGTCTGACATGGTGGCCCATGCTTGTAATCTTCTCACTGGATATATGAAGACAAGAGAACTGAGGTATTCACTGGAAAGATGTTCTAGCCTAATCAATTCACTGAGGGACTCTTAGAATCTGTGAAGAAACAAGGAGAATAACTCCTGAAGAACATTTAAGAATCTAAGAATGTCATCTTAATGTGTGCAAATTCACATGTATAAATGTGAATTTATAGACAGATGAGGGGGGAAATGCTTTACACACAAGTAGTAACTACTAGATGAGTGGTATGGATACAATTGCAGTGTATATGTTGTGTGTACTGTGGTCTGTACTGTTTGTGTCTGTGTGTGTGTGTGTACTGATCAGAGGTCTTTTCAAAATTTTTACTAGTAAATAACACTTTAAGGCACCTTCATTAGGCCCTAGATAGGCCTGCATTGTTGTGAAAAAAAAAAAACATGTCACTTCTCTCCTTTTCCAACACCTTTCACTGTGACCAATTAG
Seq C2 exon
CTAAAGTCCAGGAAGAAATTGAGCATGTGATCGGCAAGCACCGAAGACCATGCATGCAGGACAGGAGCCACATGCCCTATACTGATGCCATGATTCATGAGGTCCAGAGATTCATTGACCTTGTCCCCAACAGCCTGCCCCATGAAGTGACCTGTGACATTAAATTCAGGAACTACTTCATCCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000054827-Cyp2c50:NM_001167875:5
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.016
Domain overlap (PFAM):
C1:
PF0006717=p450=PD(5.1=20.8),PF0006717=p450=FE(21.8=100)
A:
NA
C2:
PF0006717=p450=FE(13.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAACGGCAACTATCCATTGA
R:
TGGGGATGAAGTAGTTCCTGA
Band lengths:
328-1424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: