MmuINT0044953 @ mm9
Intron Retention
Gene
ENSMUSG00000060613 | Cyp2c70
Description
cytochrome P450, family 2, subfamily c, polypeptide 70 [Source:MGI Symbol;Acc:MGI:2385878]
Coordinates
chr19:40235045-40238983:-
Coord C1 exon
chr19:40238842-40238983
Coord A exon
chr19:40235233-40238841
Coord C2 exon
chr19:40235045-40235232
Length
3609 bp
Sequences
Splice sites
5' ss Seq
CAGGTATGA
5' ss Score
9.46
3' ss Seq
CATGATTTCTACCCTTTAAGCTA
3' ss Score
6.14
Exon sequences
Seq C1 exon
GAAAAACACAATCAAAAATCTGAATTTACTATGGATAACCTGGTTGTCAGCATAGGTGATCTTTTTGGAGCCGGAACAGAGACAACGAGTTCCACAGTGAAATATGGGCTTTTGCTCCTGCTGAAGTACCCAGAAGTCACAG
Seq A exon
GTATGATCAGATGGGCAGAGGAATGTCCAGTAGAAATGGGCAGACAGCACTAGAAACCATTCTACTCTTTCCTTGAATAGACATTGTACTAGCAACAACTGCATGAATAATGTGCTTACCTACCATTGGATGGATTCAGTTCAAACTAGATCACAGAAAAGAACAAGTATAATAACTAAGATACAGCAGGGAATGGAAGAGCAGTGGCCATTATTCTCCCTGGTATGATGTGGAATCATTGATTTGTGTTGGGACCAACACAGAACAGTTTTCTTAGGGTCTGAACAGAACTAGCACCCTTCTCACATATTTTTTTCTACATGTTAATAAATACTTGTTTTTTCAGAATTATTTATTATTTAAACGTTTGTTGTCATGTATTAATTATAGGCATTGAGCTGCTTCATTACAACATTTCCTTATATGTATAACTAATTTGACTATTCCCCCGTTCCTTTCTCTCCCTCCTTCTTCCTCCCAGTAATTTCCTTCCCCTTCCCAACTGTTCCCTTTGGTACTTTCATGTCTGCTTTTTCCCTCCCTCAATAAACCAATAGTTTTGGAGGGGATGATATAGATGTGCCATTTATGGCTGAGCATTTAAAAGCATTTAAAGCCACTTATTTTATCCTCATGGTCTAGTCTCTGCAATAAGCTCTACCAGCTGCAGCAAGAACTTTCTCTGACTAAAATATGGAGTGGCATCAATCTATGGATATCAACATAAAACTTTAGAAGACACATTTTGCAAATCAACGGCAATAGCTTCCCCTTGAGGGCCTGTAACATTCTTAAACCTTTGCCCAGCCTTGAAGTACCAGACATGAATGCTCTCCTACTAAGACTGATTGGAACCTAATCAAATTTAAGTTATGAGAGAGTATGCATCATTTGTCTTTTTTGGGGCCTGGATTGTCTCATTCAATATGTATTCTTACTCTGTCTTTTTACTTGAAATTTTATAATTTTATTTTTGTCCACAATAACGTACCACTGTGTATATGTATAGCATCTTAATTATCCACTCATCAATAAGTGAACACATCGATGGATTGCATTTCCTAGCCATTGTGAATAGAACAGCCATGAACTTGTGTGAGGAAATATTTCTGCAACAAGAAATAGAATCTGTAGGGAAAATACCCTGGAGTGTTTTTAAAGAAAACTCCTGTGTTCCCTAAGTCATAACACCTGCTGTTCATGGAGATTCATTTACATAGAATGGCAGGTTTTTATCACTCTTGAATGGGTGTGCATGTGTTTTCATTTGCCTCAAAGTAAAGAACTAACCTCGAACATGGTAAACATTTTCTTTGTATTTGGGTTTTTATATCTGGGTCATTAATAATTCTATTTTTCAAGAGATCTCTATACTGACTAGCTATTGCAAATAGAGCAGCAATAAACATGTATGAACAAGTATCTCTGTAATATGATACAGAGTGTTTTGGGAAAAATACCAAAGAGTGGTTATATTTTTATCATTAGTAATCCTATTCCTTGGTCTTTTGAGAAATATCTACACTGATTTCCACAATGACTGGGGCAGTTTGCACTCTCACCACCAACAAATAATGGTTAGGGTTTGATCGTACCCTCAGCTGCATCTGATATTAGATTTCTCGATTGTAGCCATTCTCACTGGAATGAAATGTATTCTCAAAGTAGTTTTAATTTGTGTTCTCTTGATGGTTAATGATGTTGAATACTTAAAAAAAAATCGTTACCAGCTACTTATGCTTCATTTTTAAAGACCTTTGTTCAGAAATATAGCCCACGTTTAGATTGGATTATTTGCTTTGTATTTAGAGTTTTGTGTTCATTGTAAATTCTAGATATCAGTCCTGCATCAGGTTTGCAGCTGAAAATGACTTTCTCCTGTCTGGTTGAATAGAGTTGGCTACCTCTTCACTTTATTTACAGTGTTCTTTGCTCTAAAGAGACCTTTTAATTTCATGATGACCTTATCAATTGGTGCCTTTATTTCATGAATGACTTGTGTCCTATTTATTAAGTCCTTTGTCCCTACACTTCCCACTCCTGTAGCCTTACCCAAGCCTTTTTTCTTCCTTTATGCCCATGTATTCTTTTTACCTATATTCTATCTCTCCTTATTATTAAATTTTACCCTTCCTTGGTCTCCACACTTATAATTGTTCACATTCATCTACATATACATAGTAGGTTATGATTCACCGAGGAGGAAGAACACGAAATTTTTCCTTTCCGAGTTTGGCTCATCTCACTATCATGGTTTTCTTATTTATTGCTTTTAGTGATCAATTTTATGTTGTAACTTTTCTTCACTGCTGAAAATCCTTCCATTCTTTATGTGTACTACATTTTCATCACTCATTCATCTGTTGATGGACATCTAGGCTGGCTTCATATCTTTGCGATCAATAAACAAAGATATGTAAATCTGTCTATCATAGCATATGGAGGTTCTTGGAGGCATGTCCAGGAGTAGTATGGAAGGGTTGTGTGATAGATCTGTTTTGAAACTATTGATGAACCTCCATAATAATTTTCATAATGGCTGTACTAATTTATACTCCCATCAGCAGTGTATAAGGGTCCCCTCTCCCCACAGCAGTGTGTGTTGTCAGATTCCTTAAGGACAGATAATCTGAGTGGGGTGAGATGGCTTCTTATTAACACTCATTAAATAGTGTTAATTTGCATTTTCCTGATGACTAGGGATGTTGAACATCTAAACAAATACTATTTATCCAGCTTTGTTTCTTCTTATGAGAAAGTTATATTCATTTCATCTGTTGATTTGCAGATTGGCAGATTTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTTTAGTTTTTACAGTTCTTTGTCATTTCTGAATCTTAGTCCCCTGTGTGAAAGATAGTTGGCAAAGATTATCCCATTCTGGGAATTCTCTGTTGATTCTGCTGTTAGGTTTTTGTTTTTTGTTTTTTTCTTTTTTTGCTATACAGAATCTTTTGATTTTTATTTGGTTCTGCCTGTTGATTCTTGAGGCCAGTGCCCTGTAATAATAGTTTGGTTCAGAAACTTTATGCCTACACCTACTTCTTGAAGGGAATCTTTGATATTTTCCCTAGAAGCATCAGAATTTCAGGCTTTGATTAAAGGCTTTGATCTACTTTGGACTGATTTTTCTGCATATAGTGAAAGACATGAATATAATTTCATTCTTCTTCAAATGGATAGGCAGTCTTTTCAACACTATTTAATGAACAGGCTGTCCTTTTTTTCCTCACTGCATATCGTATTTTGTGTGTGTGTGACATTATTCTCAATGTGTTTATTTTGCTATTTGTTTTTCATTATGCTTGTTATTGGCATGTGGAAAAGGCATTGATTTCATATGTTAACTTTCTATTCTACTACTTTGCTGAAAGTGTTTATAGTGTCCAGGCATTCTATGGTGGATCCACTAGTGTCTCATATACAGAATCTTGTCATCTATATATTAGGGTTTTCTTCTCTTGCAAAAGAGAGGAATTTAACTCTCTACTTCCTACCACAGTTGAAAATGATCAAGAATAATATAAGAGATAATTCCTTTTCATTTTATAAAAACCATGATTTCTACCCTTTAAG
Seq C2 exon
CTAAAATTCAGGAAGAAATTGCTCATGTGATTGGTAGACATCGGAGACCCACCATGCAGGACAGGAACCACATGCCGTACACTGATGCTGTGTTGCATGAGATTCAGAGATACATTGATTTTGTTCCCATTCCTTCACCTCGTAAGACAACGCAGGATGTGGAGTTCAGAGGATACCACATTCCCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000060613-Cyp2c70:NM_145499:6
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.222
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(13.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: