MmuINT0044998 @ mm9
Intron Retention
Gene
ENSMUSG00000075517 | Cyp2d37-ps
Description
cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene [Source:MGI Symbol;Acc:MGI:3721937]
Coordinates
chr15:82519180-82520292:-
Coord C1 exon
chr15:82520192-82520292
Coord A exon
chr15:82519666-82520191
Coord C2 exon
chr15:82519180-82519665
Length
526 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CACAATGTGCTTCATGCCAGGGC
3' ss Score
6.49
Exon sequences
Seq C1 exon
GCCAAGTACAACAGGAAATCGATGAGGTCATTTGGTATGTGTGGCTTCCAGAGATGGCAGACCAGGTCTGCATGCCCTTCACCAATGCTGTCATTCATGAG
Seq A exon
GTACAGTGCTTACAGTTACTGGGATATCATCCCAATAACTTTGCCACACAGGACTTCTCGTGACATTGAAGTGTGGGGCTTTCTTATCCCTAAGGTAGGTCTGGGTCTCTCCAGTGTCTAGTCAGTGTTGCCAGCTACCCGCTGACTTGATCTGCCCAGTTAAGAAGGACTAGATTACAGGCATTCCAATTCTCAACTCAAGGGAACCAACATCCCCTGGGTAAATATGGGAATAGAAACAAGAGCAATAACTGCTTTAGAATCCCTACCTAGAAATGCAGGCAAGGTAAAATATGGCAGGAGTGGTTGTAACAGCCACTACCTACAAATACAGGTCACAGTGTGTACATCTGTCCCATCACATTTCCATGTCACAGTATTAATGAAATCTGTGAAGCTTCTGTGGTTAGTTTATATGACAGCATCCAGTGTGTGTGTGGTACAGGCTGTGCCTGTGAATGTCGTGACTAGTAAGGGTCTAGTAAAACTCACCCTGTTCATGTTCACACAATGTGCTTCATGCCAG
Seq C2 exon
GGCATGACTCTCATCTCCAACCTGTTCCGTGCTGAAGGATGAGACTGTCTGGGAGAAGCCCCTTCGCTTCCATCCTGAACACTTCCTGGATGCCCAGGGCCACTTTGTGAAGCCTGAGGCCTTCATGCCATTCTCAGCAGGTGCCTCTAGGGTGCCTTCCTGCCTATCTTTCCCTAGGGTGCCTTGGAGGGTGGAGCACCAATCAGGTCCCAGACTGAGCCCTCTTCTACACATAGGCCACAGATCATGCCTGGGGGAGCCCCTGGCCCTCATGGAGCTCTTCCTCTTCTTCACCTGCCTCCTGCAGCGCTTTAGCTTCTCAATGCCAGCTGGACAATCCCTTCCCAGTGATTATGGCATCTATACAATGCCAGTTACTCCAGCACCTACCAGCTCTGTGCAGTGGTTTGCTAGCAGGGGCAGTGGCTCCAGCCATCATCACAGATTGTTCTGACTGATGTCCAATAAACAAGTTTTGTGTCTGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075517-Cyp2d37-ps:NR_033515:2
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGGTCTGCATGCCCTTCAC
R:
AGGAGGCAGGTGAAGAAGAGG
Band lengths:
342-868
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: