MmuINT0044998 @ mm10
Intron Retention
Gene
ENSMUSG00000075517 | Cyp2d37-ps
Description
cytochrome P450, family 2, subfamily d, polypeptide 37, pseudogene [Source:MGI Symbol;Acc:MGI:3721937]
Coordinates
chr15:82689134-82689862:-
Coord C1 exon
chr15:82689762-82689862
Coord A exon
chr15:82689236-82689761
Coord C2 exon
chr15:82689134-82689235
Length
526 bp
Sequences
Splice sites
5' ss Seq
GAGGTACAG
5' ss Score
6.62
3' ss Seq
CACAATGTGCTTCATGCCAGGGC
3' ss Score
6.49
Exon sequences
Seq C1 exon
GCCAAGTACAACAGGAAATCGATGAGGTCATTTGGTATGTGTGGCTTCCAGAGATGGCAGACCAGGTCTGCATGCCCTTCACCAATGCTGTCATTCATGAG
Seq A exon
GTACAGTGCTTACAGTTACTGGGATATCATCCCAATAACTTTGCCACACAGGACTTCTCGTGACATTGAAGTGTGGGGCTTTCTTATCCCTAAGGTAGGTCTGGGTCTCTCCAGTGTCTAGTCAGTGTTGCCAGCTACCCGCTGACTTGATCTGCCCAGTTAAGAAGGACTAGATTACAGGCATTCCAATTCTCAACTCAAGGGAACCAACATCCCCTGGGTAAATATGGGAATAGAAACAAGAGCAATAACTGCTTTAGAATCCCTACCTAGAAATGCAGGCAAGGTAAAATATGGCAGGAGTGGTTGTAACAGCCACTACCTACAAATACAGGTCACAGTGTGTACATCTGTCCCATCACATTTCCATGTCACAGTATTAATGAAATCTGTGAAGCTTCTGTGGTTAGTTTATATGACAGCATCCAGTGTGTGTGTGGTACAGGCTGTGCCTGTGAATGTCGTGACTAGTAAGGGTCTAGTAAAACTCACCCTGTTCATGTTCACACAATGTGCTTCATGCCAG
Seq C2 exon
GGCATGACTCTCATCTCCAACCTGTTCCGTGCTGAAGGATGAGACTGTCTGGGAGAAGCCCCTTCGCTTCCATCCTGAACACTTCCTGGATGCCCAGGGCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000075517:ENSMUST00000100380:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAAGTACAACAGGAAATCGA
R:
GGCATCCAGGAAGTGTTCAGG
Band lengths:
195-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types