MmuINT0045015 @ mm9
Intron Retention
Gene
ENSMUSG00000025479 | Cyp2e1
Description
cytochrome P450, family 2, subfamily e, polypeptide 1 [Source:MGI Symbol;Acc:MGI:88607]
Coordinates
chr7:147955463-147956127:+
Coord C1 exon
chr7:147955463-147955623
Coord A exon
chr7:147955624-147955950
Coord C2 exon
chr7:147955951-147956127
Length
327 bp
Sequences
Splice sites
5' ss Seq
CAGGTGACC
5' ss Score
6.54
3' ss Seq
CATAGTTTTGTTCTCCTTAGGCT
3' ss Score
8.67
Exon sequences
Seq C1 exon
GCCAGCCTTTTGACCCTACCTTTCTGATTGGCTGTGCACCCTGCAATGTCATTGCGGATATTCTCTTCAACAAACGCTTCGATTACGATGACAAGAAGTGTCTGGAGCTCATGAGTTTGTTCAATGAAAACTTCTACCTGCTGAGTACTCCCTGGATCCAG
Seq A exon
GTGACCCTGCTCCTCCTTTTCCATAAACCTTCAGTTGCACGGTTTCCATTAGAAAGGGAAGAAAAATTCAGATTGCATGAGAGGGACCGACCTAGAAAGTCAAACTACGGGAACATACAGGAGGGCATTTGTCTAGGTTGGCTCAGCATCCTTCTCACTTCAGGATCCGTGTATACTTGAATGTGTACACATTCCTACCCACACGACTTGGAGAACAGCACTCTCAAAAGACACCATGGGACCCAAAATTTTAATCAGTATGATAAAGACAACCATAAATTCATTGTTTGGAGGCTCCTATCAGTTACATAGTTTTGTTCTCCTTAG
Seq C2 exon
GCTTACAATTACTTTTCGGATTATCTACAATATCTACCTGGAAGCCACAGAAAAGTCATGAAAAATGTGTCTGAAATAAGACAGTACACACTTGGAAAAGCCAAGGAACACCTTAAGTCACTGGACATCAACTGCCCCCGGGATGTGACTGACTGTCTCCTCATAGAGATGGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000025479-Cyp2e1:NM_021282:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(11.6=100)
A:
NA
C2:
PF0006717=p450=FE(12.7=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCAGCCTTTTGACCCTACC
R:
TCCATCTCTATGAGGAGACAGTCA
Band lengths:
334-661
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: