MmuINT0045372 @ mm10
Intron Retention
Gene
ENSMUSG00000024292 | Cyp4f14
Description
cytochrome P450, family 4, subfamily f, polypeptide 14 [Source:MGI Symbol;Acc:MGI:1927669]
Coordinates
chr17:32905071-32906131:-
Coord C1 exon
chr17:32906049-32906131
Coord A exon
chr17:32905679-32906048
Coord C2 exon
chr17:32905071-32905678
Length
370 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGG
5' ss Score
11.08
3' ss Seq
CTAATCTTGTCCTCCCGCAGGAA
3' ss Score
11.34
Exon sequences
Seq C1 exon
GTCTATGACCCCTTCCGCTTTGACCCTGAAAACATCAAAGACAGCTCACCTCTGGCATTTATTCCCTTCTCGGCGGGACCCAG
Seq A exon
GTAAGGCCAATGGGCTTGGGTGACTAGAGTACGGTCTGGGACTGACAAGTAGAAATAGTAGGGAGTTAGGATGGTCTGGCTCTGGTTTTCCTTCCTGCCCTTTATTCAGGTTATTTGCAAAGGTCTGTAGAGTAGGAGTTAGAAAGAGAAGGGCTGTTGCTCTATGCTCAGAGTGCCGCCCATCTGAACTGGGCAGTGAGCCTGCAAGACCTTTAGGGATGTAGATGTCCAATTGGGGTCCCAGGCGCGTCACGGTCCTCCTGCCCTTCATGCTGACTAGGTGTTGCAGAGACCGTGTCAGGTTGGGTTCCACGGTGTCTGGATGGATCCCGGCTCAGTCATAGGTAGTCCTAATCTTGTCCTCCCGCAG
Seq C2 exon
GAACTGCATAGGACAGACTTTCGCCATGAGTGAGATGAAGGTGGCACTGGCGCTGACGCTGCTGCGCTTCCGACTCCTACCGGATGACAAGGAGCCGCGCAGGCAGCCAGAGCTGATCCTGCGCGCAGAGGGCGGGCTGTGGCTGCGGGTGGAGCCGCTGAGCGCGGGCGCTCATTGACCTAAGACCTGGTCTAGAGCCACCCTACCAACATATCTCTGCGGATCCCAGAATGAACAGAACTGTCATCCATACCTGAATCTTACCGAGAGCCAGCAGGGGGCGCTGTGAAATCCAGTGCGTGGGTGAGAGAGGCCTGCTCCATAAGGTGCATTCTCCTCCAACCAACCTGGACTATTCTCTGAACAACATAGGAAGCCAAAGGGATGTCTGAGCAAGAGGCCAGAATCAAAGGCAAATTTGAGCTCTGATTCATGCAGCTCTGTTTCCATTACTTTGACTTCCATTCTAATCACCTAATAGACCATTCTTCTCTCACCTCAGAATTACTTTTCTGTGGGCACTAAATTACTGTGTTTATTAAACCTTAAGACCGGATTTTTTTTCTCATTTAAAGCTAGGGTCTCATTATATCATCTTGAACAATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024292:ENSMUST00000054174:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTATTCCCTTCTCGGCGGGA
R:
TATGGAGCAGGCCTCTCTCAC
Band lengths:
350-720
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types