RnoINT0044546 @ rn6
Intron Retention
Gene
ENSRNOG00000004786 | Cyp4f1
Description
cytochrome P450, family 4, subfamily f, polypeptide 1 [Source:RGD Symbol;Acc:70926]
Coordinates
chr7:15179467-15180541:-
Coord C1 exon
chr7:15180459-15180541
Coord A exon
chr7:15180092-15180458
Coord C2 exon
chr7:15179467-15180091
Length
367 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
CTTATCTGATCCTCCCACAGGAA
3' ss Score
10.79
Exon sequences
Seq C1 exon
GTCTACAACCCCTTCCGCTTTGACCCTGAAAACATCAAAGACAGCTCACCTCTGGCATTTATTCCCTTCTCGGCGGGGCCCAG
Seq A exon
GTGAGGCCAATGGCCTTGGGTGACTAGAGTACGGTCTGAGACTGATAGTGGGAATAGTGAGGAGTTAGGGTGGTCTGGTTCTGGTTCTCCTTCCTGCCCTCTATTCGAGTTATTTGCAAAGGTCCGGAGAGTAGGGATTGAAAGAAAAGGGCTTCTGCTCTGTGCTCAGAGTCCCGCCCGTCTGAACTGGACACCGAGGCTGCCAAGGCCTTTGGGGATGCAGATGTCCAATTGGGGATCCCGGACGCGTCACGGTCCCTCCTGCCCTTCTTGCTGACTAAACGCGGCAGAAACCGTGTCAGAATGGGTTCCACGGTGCCTGGTTGGGTCCTGGAGCAGTCATAGTCCTTATCTGATCCTCCCACAG
Seq C2 exon
GAACTGCATAGGTCAGACTTTCGCCATGAGCGAGATGAAGGTGGCGCTGGCACTAACACTGCTGCGCTTCCGACTCCTACCGGACGACAAGGAACCGCGCAGGCAGCCAGAGCTGATCCTGCGTGCCGAGGGCGGACTGTGGCTGCGGGTGGAGCCGCTGAGCGCGGGCGCGCAGTGACCTCACAGTTGGTCTGGAGCACCCCCACCATCCTACCTCTGAGGATCCCAGAATGAACAGAACTGTCACCCATACCAGAATCTTACGGAGGGCCAGCAGGGGGCGCTGTGAATCCAGTGAGTGGGTGAGAGAGGCCAGTTAGTGTCTGAGCCAAAGACCTTTGACTTCGTCTAACTGATCGCCAGCCTTTATCATAAGGTGCATTCTTCTCCAACCAACCTGGACTATTCTCTGGACAATAGGAAGCCAAAGAAACGTCTGAGCAAGAGACCAGAATGAAACGCAAATTTGAGCTCTTATTCTCGCAGCAAATCCCTTATTCAGCTCCATTTCCATTATTTTGACCTACATTCAAATCATCTAATAAATACATTCTCTCACCTCGGAATTACTTTTCTGTGGGCACTAAATTACTGTGCTTATTAAACCATAAGACCGGCAATTTTT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000004786:ENSRNOT00000006533:11
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.036 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(5.8=100)
A:
NA
C2:
PF0006717=p450=PD(10.6=81.7)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAAAGACAGCTCACCTCTGGC
R:
CCCACTCACTGGATTCACAGC
Band lengths:
351-718
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]