MmuINT0045375 @ mm9
Intron Retention
Gene
ENSMUSG00000024292 | Cyp4f14
Description
cytochrome P450, family 4, subfamily f, polypeptide 14 [Source:MGI Symbol;Acc:MGI:1927669]
Coordinates
chr17:33048102-33048511:-
Coord C1 exon
chr17:33048384-33048511
Coord A exon
chr17:33048224-33048383
Coord C2 exon
chr17:33048102-33048223
Length
160 bp
Sequences
Splice sites
5' ss Seq
CACGTGAGT
5' ss Score
9.3
3' ss Seq
GCCCCATCTTCTTCTGCCAGGCC
3' ss Score
8.42
Exon sequences
Seq C1 exon
GGGATGGGCTCTTGGTGAGTGCTGGTGACAAGTGGAGCCGCCATCGTCGCATGCTGACACCCGCTTTCCATTTCAACATCCTGAAGCCCTATGTGAAGATTTTCAACGATAGCACCAACATCATGCAC
Seq A exon
GTGAGTTTCTGGAACACAGGGTTACAACTCTTTCCCAAACAGGGGCTATTCCTGGATTTGGGTGGCTGGAGCATAAAATGAGAAAGCTGTGTCAGGGGCTGAAATTAGGACAAGTCTCAAGGAGCCAAGGTCCAACATCAGCCCCATCTTCTTCTGCCAG
Seq C2 exon
GCCAAGTGGCAACGGTTGATTTCAGATGGCAGTGCCCGTCTGGACATGTTTGAGCACGTCAGCCTGATGACTCTGGATAGTCTGCAGAAATGTGTCTTCAGCTTTGACAGCAACTGTCAGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024292-Cyp4f14:NM_022434:4
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(9.1=100)
A:
NA
C2:
PF0006717=p450=FE(8.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGATGGGCTCTTGGTGAGT
R:
CAAAGCTGAAGACACATTTCTGCA
Band lengths:
234-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: