MmuINT0045422 @ mm9
Intron Retention
Gene
ENSMUSG00000003484 | Cyp4f18
Description
cytochrome P450, family 4, subfamily f, polypeptide 18 [Source:MGI Symbol;Acc:MGI:1919304]
Coordinates
chr8:74524987-74526431:-
Coord C1 exon
chr8:74526287-74526431
Coord A exon
chr8:74525041-74526286
Coord C2 exon
chr8:74524987-74525040
Length
1246 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAC
5' ss Score
6.89
3' ss Seq
ACGGTCCTTGTTCACACCAGCTT
3' ss Score
4.66
Exon sequences
Seq C1 exon
ATCCAGAGCTCAGAGGAAGGACTCCTGTACATCCAGAGCCTGGTGCGAACCTTCAGGGATGCATGCTGCTGGTGGGTGGGGCCGTTGCACCCAGTCATCCGTATATTCCACCCTGCTTTCATCAAGCCTGTGGTCTTGGCTCCAG
Seq A exon
GTAGACAACATGCTGGTCCCAGCTTGCACACCTCTGACCCTCAAGTGCAGTCTACCACAGAAGGGCTATGGTAGAAATGTCCCTACTATGTCTCATCTAGACACTTCTGACTCATGCGTGGCCATGTGGCACCTGTTTAGAGCATGCCGTGTGATGTTTTCTGGGTGGTCTCCATCTTTCTGGTGTGTGGACCTGGTACCCACCCAGGCTCATATAACAATGGTTCTCTGTGGGGCTATAAACAATTGGGACATGTTGAGTTCTGTTTGGCTCTTATCTGAGGTATTGTTAAAAATAGTCTTTTTCTCCTGGCTGTGTCTAGACCCTGTTTGGAGTGTCTGAAGTCTGGGACAAAGGACTTTCTGAGATATGACTGAGGCCTTATTTGAGAAAAATCTGAGTAGTGTTAAAATCTGTTTAGCTTACATCAGGGAAGTTAATTTTAATATTTTAATTATTTTTACTTTTATTTAGTGTGTGTACTATAGAGCAAGGTGGAGGCCAGAGGACAAATTGCAAGAGTCAGTTCTCTTTTGTCCCAGGAATCAAACTCAGGTTATGAGGCTTTGTGGCAAGCACCTATACCTATTGAGCCACCTTGCTGACCCCCACATGAATTTTTCCCCTCTAAAACTGTTTTCCTAAACACTATGTTTTATTTTCACAGTGTAGCTCTGGCTAGCCTAGAATTTATTATGCAGACTAGGCTGGTCTAAAGCTCATAGAAATCCACCTACCTTTCTCTCCAGAGTACTGGGATTAAAGGCATGCTCCATGCCTGGCCCAGAAATGGACTCTCAAATCACATCTGAGACTTATCAGTTGAGTGTGCTGAGGTGTGTTTAGCCATCTGTGTCGCAGTTAGGTCAGGTCATATGTGCTTCAGTCATGTTAGCCAATGCGTGTCTATGTCATATGACTGTGTCAGGAGATGTCAGCAGATGCTGGGAGGACAGAAACATTTGGTCTCTGTAAAGGCCTGCAGAGTGTGATGCTGTACTCAGCAAGGTAAACAGGTTAGACCATGTAGTAGCCGTATGAAGGTGTGCTGCTGTGTGTATGTCATATGTCAGGCTGAGCCTTCTCTATCTAGTGCTGTTTGGCCCTCTTGTCTCCCTCTGTCCCTGCCCCCAAATCTACCATGTGGACTTAGAGGGAGGGGAGTACACAGATACCAGGCTGAGGGCCCCATTTCTCCCATGCCCTCCCTCCTGCCATGGCTCCTGACGGTCCTTGTTCACACCAG
Seq C2 exon
CTTTAGTTGCCCCCAAGGACACAGTCTTCTACCGTTTCCTGAAGCCGTGGCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000003484-Cyp4f18:NM_024444:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0006717=p450=FE(10.3=100)
A:
NA
C2:
PF0006717=p450=FE(3.9=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGAGCTCAGAGGAAGGACT
R:
CACGGCTTCAGGAAACGGTAG
Band lengths:
192-1438
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: