MmuINT0046468 @ mm10
Intron Retention
Gene
ENSMUSG00000026883 | Dab2ip
Description
disabled 2 interacting protein [Source:MGI Symbol;Acc:MGI:1916851]
Coordinates
chr2:35723029-35727513:+
Coord C1 exon
chr2:35723029-35723222
Coord A exon
chr2:35723223-35727425
Coord C2 exon
chr2:35727426-35727513
Length
4203 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
3' ss Seq
CTCTGCATTTCTGTTCACAGGTT
3' ss Score
10.62
Exon sequences
Seq C1 exon
GATCTGGCAGTGCTACAAGACAAGCTACGGATCTCCACCAAGAAGCTGGAGGAGTATGAGACCCTATTCAAGTGCCAGGAGGAGACGACGCAGAAGCTGGTGCTGGAGTATCAGGCTCGGCTGGAAGAAGGTGAGGAGCGGCTGCGGCGGCAGCAGGAAGACAAGGATATCCAGATGAAAGGCATCATCAGCAG
Seq A exon
GTGAGCAGGCTGCCCATTTGTCCACAGGGCCTCTGTGGGACGAGAGGAAAGCCGGTGCCCGGCAGCGGCGGTGGGGAAAGGGGAGCTCCTATAAGAAAAAAAGAAGTTGAGTCATCCTGCCAAGCTCTAGGGAAATTGGGAAATGATTTGAGATGCTAAGCAAGACAGTGAGGAAGCCATTGAGGGCAGGAAAATGGACAGCCATCTGGATGTGTGTCAGGGTGCCCACTGTGGGTAGGGAGGAGTTTGGGTTGGAAAGAGGGGCGGAGCTATGCCAGTATGGTGAATGGGGTCTGTTGGGTTTCCAGAGTCTGGTTTGTCTGAAGAGTTTCTGAGGTCAGTTGGTTCTGGTAACAAGCTTTCTTCCCTCTATCTCTGCCCCGATGGGGTGGGCATGCTGTCCTTGGAGTCTGCACACAGGCAGTACAGTATCTAAGCCACTCACTATGTCCCAGTCCTGGAGCATCTACCTCACAGCAGTGTGTAAGGAGTGTGATTGATAGCCTGATCCTTGGCTGAGACCTGGGACTGAGCAGGTGTGAGGTAGGCAGGGAATTCCCCCTTAGCCTTCTGTTTTGTCCACAGCACAAACCCTTCCCAGATCTCCTGTTCTGCCCGCCTGGTGGCTGTGTCCTGTCCTGAGCTTCTGTTCATTACAGATGATTAGCAGAGCAGAACCCAGGTGGCTGGACGCCTGCCAGCTGCTTGGCACCCCTCTCTGTTCTTGGCTCCCCTGGTGCCTGGCCATCACCTCTTCCCTGTGTCCGGGGATGTGAACATCATCAGGACAGTTGGGTCTAACATGTCCTTGCTGCTCCTTTGCCTGCGTGCTTGCGTTATTGTGTCGGCTTCTGAGATAGCCGTACTGAGCTATCTGATCATGATTCTCCAGGGTTATTTCTGTTGGTTTTGTTTCATTGATACTTTCTAGTCCTGGGTGGGTGTTCTTTTAGGATTATCATGTACCATTAACAAACTGTCCTTTTTAATTACACTCTTTCCTCCATCTTATTTCTAGTGTAGATACTCTTTCTCTGGTGATAGCACAGTGTATCATTTTCTGTCCTATATACTTTTAAACCATTGTTTGATCCATTTCTACTTCTATGATAAAATATCAGCACCAGGTGATTATAAACAAGAGAAATGTACTGTTCACCATTCTGAAGGTTGCCATGTCTAAGATCAGGGTGTCAATAGATTTAGTGTAGCTCTCCTTCATAGATATACCTTGGTGCCATGTCCTTAGAGACGAGCTCCTTCCAGCTCCTTTGGTAAGGGCACTAACCGTGCTCTTGAAGGCAGAAATATCTTGTAACCCATCACTTCCCAGAGGACAACTGGTAGCACCGTAGAGGTTAAGTTTCAGTGTACATGTATTTGAGTGTGGACACCAACTTTCAGACCATAGTACCCATCGTTGTGCACAAAGTTTATTTTACAGGTTCCTATTGTTAGGTCTGTTTATTGTCTAACAACTTCTGCCTTTTAATTGGAGCGTTTAAGCCATTTACTTTTAATGTGATTATTTTAAGCCTGTTAATCTTAAAGCTATTTTCCTGTTTATATGTAGCATTAGCACCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTCCTTTCTTTCTTTCTTTCTTCCTTCCTTCCTTCCTTCTTGCGTTCCTTGGACTGTATCTTAGTCCTCAGCATCTCTGTTGGCTTCCATGCTGTGTGGCCCCAGTGCTTTGGGTGTTAGTCAACAGTCTTCCTCAGTGGGCAGGTGGGAACCGTGCCGGGCTGTGCAGGCCACATGATCTTGCTGCTCCTTTTCACCTGCTCTCACAGCAGAGCTGGGTGATGTCAGGGCTTACAGAGGAGGCGGTGGCTTGATGTGACCCCTCCCTGGCTGCAGTGGCAAGAACATTGCCCTGTCTTTGTTTTTTGTTGTTTTGTTTTTTGTTTTACAGTCTCCTTTTTCTCTCGCTGTTTTTAAGGTACCTCTCCTGGGCTAGAGCTTTGCTCATTGTTGGAATGCTTGCCTGGCGTGCACAGACCCTTGGTTGGATCCATAACATTGAAATTTTTTTAATGTTATCTACTACTGGGGCATATATGTATGTGTGTGTAGGGCTAGGTGTGTAGGCATGTGTAAATAGTCCATAGGACAGCTTCGTGTGTGTGTGTATGGTTGTATAGTTATGTAGGTGTCTGTGGGGGTGTAGGTCAGAGGACAATTTCATGTGTGGGGGTTGTATAGTTATGTAGGTGTCTGGGGGGATGTAGGTCAGAGGAGAGGACAGCTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTGTATAGTTATGTAGGGGTGGGGGAGAGTGTAGCCATAGGACAGCTTCATGTATGTGTGTGTGCATGTGTGTATGGTTGTATAGTTATGTAGGTGTCTGGGGGGGTGTAGGTCAGAGGACAGTTTCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGGTTGTATAGTTATGTAGGTGTCTGGGGGGCTGTAGGTCAGAGGACATCATCCAGGAGGCTTCCCTCCACCGTGGGTTCTGGAGATTAATCTCAAGTCTCTAAGCCTCTTCACAGTGTTCCTTTCATTAAATGTTGTCAACAGTCTCACCTGCTGTGGTTCTCTTGGGTTTGCTGGGCTGAGATCTGTAGGTGGATGGCTCTGCTTCCTACTTCTTCCTCTAGGGCTCCCGTTGCCTGCCCTCAGGTACAGTGGGCTCCTCTGTACTGTCTCCCATTTCGCTGTTCCTTCATTGTTTTCTTCTTCCTTCTCTTTCTCCCTTTTATTTTATTTTATATGGATGGGTGATTTGCCTGCATGCAGGTCTGTCTCGGATCTCCTGAGCTGGAGTTAGAGGCGCTTGAGCTGCCATGTGTGTGCCAGGAACTGAACTCAGGTCCTTTGTGAGAACAAAAGGTATTCACAACCATGGTGCTATCTCTTCAGCCCCCACAGTTGTTTTCTTTTTCCATTGTTCTCTGAGTTTTACTTTATATACATTTTTATATTCCTGGGTGAGGATTGAACCCAGGGCCTTGGGCAAGCTAGACAGTTGTCTGTCACTGAGTTACACCCCAACCTTTGTACTTGAGACAGTCTGTTAGTAAATTTTCCAAGCTCTCCCTGAACTTGCCTACAACCCAAAAGGTCTTGAACTTGCTGTCATCCTCCTGCATCAATTTCCCAGATAGCTAGCTAGGGTTACAGGCCTGTGCCTAGGCCTGGTTCACATGTGATCTGAATGGCATACCAACGTTTCTGCGGTGCCGGTGCCTGCAGTCAGCCCTTGCTCCTTCAAGTCTCTAGAGTTTCACTGTGGTTTAAACCTCTTCTACTTTCCTCATGGTTAAGACTGTCTCTTGGGCATGTAGAATGTCCCTTCAGTTGCTGCCTCACAGCGTCACCTACTTCCCATCTGACATCTCAGCTGTTCTCACTGATTTGTCTCCTGGTTGTAGATTTTATTTCCTTATATCTCTGCATCCTTGGCAGCTCTGGTGGGATGCCAGGCACGTTGGAGCTTCACTAGGGTGGGACCTGAAGGCCTCAGACTTGGTCTCATCTGGCCATTCCACAGTGTAGCTGCCTTCCCAGAATTCTTCATGGCCCCCTATGGCCCATTTTCCCCCCACATCTAGCCTGTGGGATGCTCCCAGGTAGAATTTGGAAGAATTAGGATTCCTACAGAGATTTGGGGTGAATTGGTAGGGTCCACCTTTGCCTGGAGCTCCTGTAGGTCCTCCACCTTGTCCTTCCTGAACTCCCTCATCACTTTGATACCAGCACCCCACTACAGCTGCTGTGCAGGCTGTAGTTACAACCTAGTGTGAAGTTCCTGGTGTAGTGAGCCCCTGAACCTTGTGCCTTCACAAAGTCCATACCACCTCAGGAAACATGATAGAAGGGGGTCTAGAGCCTTCTCTAGAGCCTTCACCATATCCTCTGCCACAGATCCTATAACATGACATTCCTTGGGTCTTAGAAGTGCACTGGAATGGAAATAGCCCCAGAGAGCAGAGTTGCAGAGGGAGAGTTGAGGTCAAGACAGGGTAGCCCAGCCATGCCACTGCTTGGGGGACAGTTCTAGATAGGATGGTTTCCCACAGGCCCCACAGTATACTTCCTCCTCCTAGTGCTCCTGACTCTGCATTTCTGTTCACAG
Seq C2 exon
GTTGATGTCAGTGGAAGAAGAACTGAAGAAGGATCATGCAGAGATGCAAGCAGCTGTAGATTCCAAACAGAAGATCATCGATGCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026883:ENSMUST00000112983:12
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.299 A=NA C2=0.447
Domain overlap (PFAM):
C1:
PF120043=DUF3498=PD(0.3=1.5),PF120043=DUF3498=FE(52.0=100)
A:
NA
C2:
PF120043=DUF3498=FE(23.6=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types